Thalassiosira pseudonana: THAPSDRAFT_25140
Help
Entry
THAPSDRAFT_25140 CDS
T01078
Name
(RefSeq) predicted protein
Organism
tps
Thalassiosira pseudonana
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CXXC
PHD-1st_NSD
DDT
PHD
PHD_2
Pentapeptide
Pentapeptide_4
zf-PHD-like
LD_SV2
Motif
Other DBs
NCBI-GeneID:
7442527
NCBI-ProteinID:
XP_002296804
JGI:
25140
UniProt:
B8LCL5
LinkDB
All DBs
Position
16
Genome browser
AA seq
2544 aa
AA seq
DB search
MDGSGSYPIVNSGNSQQQHPAPPQSQQHQSNVASSNMDGASYNDGQVFGGYNNNNGYAQQ
NANAALHAAVQQGQWSVLGGSYQIMNNVAQPSSNYPIANSNNPQYPNTNISYSQQSSSSS
GMQKTSLNAWGAWSNSQQLPSNASSQQGNASNANGQNQLIRFMTGAGSTQGVNSSYNHSY
NQSDNVGNNVGGANEGGSGSFSSGQVGAAGVTMDVPNSVASVNASTIQQPSAFTIGGINA
ATSSVGGNVGTSSDQMGGTNSSPSTNNSQQFASLSPSVGINRQSNCNKVHQSSATRSETM
NINSLQSGMTHGNPSSFTTNGAATSPSGNLTLSAFTTSANNLGSALTNNNTTGQPIQNVV
SYFSPAKKDQPVGQDEAKIEETQHIKERTSKHALSDESKSADTKDETDTPPEYKPLENTM
DNLLALVTKSKAKKRPVKSSTQPPIVSSKYIEIPAEFSPSHSYRATAAYSLLRTLSKELR
LSPFTLQAFLQGLMLPVPSRLMGEVHVRVMRLLCANIGMGSYSRFGEGTLSARTKRGDNL
YFLDSGTWPLFYEDYVLATESKFVDLDDGKASIDTRTIMFPTDSVEMNPRQTNKRPRACK
RVPYPGEGWIDRCPVGPLGQRNNMGRFTCCPFHIATAVKAARKGLHGPVARNIETIAPAV
KESQTPKKRGRPARSAARKRSKKADSDESSSDDDYESDDSHDFVSSFEKREPPKKRRRPR
KNPVVGVSVIHTPNVVYPAQPTSINRPCPYEPSKKLNRVMPVDGLLHAPGNAAKPIAYPP
PATVGVNRHPWKNPVVGVTIIHTPNDVYPPSPAPKLMGAPLVHALASKEPAHPLTLNTVP
SIHKPSLPVTTDVSSVPVKVDPPPYYVPKSNTAPPNAQSNAASHNTSATSSVLPKVLHVL
PPQPTYDRQCQPILVPPIPPQDEDLDALVVSKGAEKTIARYFLEGDLFVRDTKASDADGS
KGDAAFDGEVGVSVSEDFSAHMIPIKQLRKGIPYHHLSLEAKLTMLEFLLDDLLTVPEIA
GEMTRRHQITDSIELPYGGPPPLSHEFAEIVNDDECTVCGIEGDLLCCDGCPGSFHRQCI
GVARLPEGKWLCPECKTVDATKLAPLGSDRRPFIGWFTFDELKEGIERPMITEQQSDPIY
ETQTVLPTAPQSPPGFPATFPPHLHPNELMTHPAQQIGNPQTCPAQMNPNQQTTISNQAN
ANSQAVANSDVGEIQCKIPKDVELLVSAGKVFARYRSSLLPFDPIEPGQSLESTAVSLAT
MKPPVPLNCAQLTELLKLLGPKMCLLPPWIRLSFSPRKLFVDASPNAIQPGMVESINKLI
AFKNEERLMAVASNSAEINNAMLYENKFRRAPADVLVQHQLGQFILPAQMSDIISHTTKV
GGLTNASLDPTAEQVPSVRIHYFDPLLSLCDKMVTFERLFRDAYLLDDRWGTNGDEMDDY
GWSHRVRSASSITELAALLVKLVDACSLRAFHLKWFAVKDNGNDEEVARLSEGQSEPSAL
ADDWTLEKEQHRRKWERCTGAFILRLLKDDGIADKIFEEGDSTTKRGKKQKLVNDNPNAA
TAGTSSSELTNIFNDVANDQIASQATINDVKKEISSPSADPVTSTNEKLPKADGIGVVES
EMHNNSAELVKSDSVAGATSEVHSFPAMLTAKNDAASDDVCMNEVDEPLRMRGGGPEDEP
IKGSSDASSAMNQSDTASATPVSRGLPSSSVGIQSPTKRCGKCETCLQVDCRTCIFCLDM
PRYGGPNIRKKRCMMKKNCLYQDEETSRSDNPDGVIVDQPPKKRGRGRPRKDGKESVPRQ
KLATAQKPPKPKSTKKRRQTIDAVPHMPSNSRRRSGRLNIVRHQIETLLGINEGQVTSKI
EKAINDVKIDKLEELFAESDKTSYFAIAGRKLFEPEGTVSSHIAKRLGRNAGSIRAPSIA
YETQFEVGESATCHHWRTMTLQSKTYEELYYSVRFLDSHIDKGVLSSCSAIAVRRANAKK
NNPTTTFATAVRCEQRDPMTGLNEYFVVPVGKNRGTWQSEVSVDLSSLVQYRFDRISSFG
QPKEELSRQRRMKEQEAEKEQMEIKRKAEAAAKQLELERHHKAAIERLTEYSQPKPTINT
DLIRRCQMDIQAAFDRHKEETLELLVSSASRGEKQVSSAEMAKTRQRNKTAMAAPSNMLR
SAGGRSLSDIELTQKIQLAENAAVRMYTERARKKAAAPKPKPKPEAQPSRPATKRTNPLP
NQAFVVGMISKLNQLHPQQQTRPQQQPPMEYNTTMQINPQCYQQNFNAQYSQGGNITNNA
MQMQSANGGFRMLLRFRCSTTTISLDNKGARTIHNSDMRYPDYHEDLTPDSPHNSPPTNM
KSFLALLSIATLSSSHAFHASAPLPIAASSRVGSRSTSVSPQSQDGDASTIDTSNAQSPL
SNVATVFASTVAVGVMLLSTVGSTAWAVSGGGLDYAGIDISGQDFSNASYKGKDFTQVNT
NFEGADVRGVSFEDTSMDNANLKDIVAVGSYFGQSLVDVKTLENGDFTDATIPPKTLKLV
CDREDVKGTNPTTGADTRDSLMCL
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atggatggctcggggagttatccaatcgtaaacagtgggaattctcagcaacaacatccc
gctcctcctcaatcacagcagcaccagtcaaatgtagcgtctagcaatatggatggtgct
agttacaacgatggccaggtgtttggaggctacaataacaataacggctacgcccagcaa
aatgccaatgctgctctacatgcagctgtgcagcaaggacagtggtctgtattaggggga
tcctatcaaataatgaacaacgtcgcacaaccctcttcgaactatccaattgcaaactcg
aacaatccacaatatcccaataccaacatctcctactcacagcagtcgtcatcgtcatcg
gggatgcaaaagacttctttgaatgcatggggtgcatggtcgaacagtcagcagcttcct
tccaacgcttcatcccagcaggggaatgcttcgaatgcaaatgggcaaaatcaactgata
cgattcatgaccggggcaggatcaactcagggggtcaacagttcgtataaccattcatac
aaccagtcagacaatgtgggcaataatgtgggaggggctaatgaagggggttctgggagc
ttttcgtcggggcaggttggtgcagcaggtgttacaatggatgtgcccaactctgtcgct
agcgtgaatgcatcgacaattcaacagccatcggcatttacaataggaggtattaacgct
gctacatcttctgtgggaggaaacgtaggcacatcctctgatcagatgggagggacaaac
tcgtcaccttcaacgaacaactcccaacagtttgcatctttatctccttcggtcggtatc
aataggcaaagcaattgcaataaagttcatcaatcgtcggcaactcgaagtgaaactatg
aatatcaattcacttcaatctgggatgactcatggcaacccttcgtcgtttactacgaac
ggggcggcaacttctccttccggaaatcttacattatctgcattcacaacaagtgcaaac
aaccttggctcggctttgaccaacaacaataccactggccaaccgatacagaacgtagtt
agctacttctctcccgcgaagaaggatcagcctgtgggacaagatgaagcaaagattgag
gagacgcaacacatcaaagaacgtacgagcaagcatgctttgtcggatgagagtaagagt
gcagacacgaaggatgagactgacaccccaccagagtacaagccacttgagaacacaatg
gacaacctactggcgttggttactaagtcaaaggcgaagaagcgtcctgtcaaatcaagc
acccagcctccaattgtctcatcaaagtatattgaaatacccgcagagttttcaccctct
cattcttaccgagcaacggcagcatactctctccttcgcactctgtctaaagaacttcgg
ctgtcaccctttactttgcaagcgtttttgcaggggttaatgctaccagtgccttctcgt
ctaatgggtgaagttcatgtcagagtgatgaggttactttgtgcaaacattggcatgggc
tcatattccagattcggggaaggaacgctttcagcaaggacaaagaggggagacaattta
tactttcttgatagtggaacgtggcctctcttttacgaagattatgttcttgctactgag
tcgaagttcgtggatttggatgacgggaaagcgtccattgatacacgtactatcatgttt
ccgactgatagcgttgagatgaatcctcgacagacaaacaaaaggccgagagcttgcaaa
agggttccttatccgggcgaggggtggattgatcggtgtccagtaggtccccttggccaa
cgcaacaacatggggaggtttacgtgttgcccttttcatatcgcgacggcagtgaaagca
gcacgcaaagggctgcatggtccagtagcacgaaacatcgaaacaattgcacctgccgtg
aaagagagccagacacctaagaagagaggacggcctgcgagatctgctgctcgtaaacgt
tcaaagaaagctgattccgacgaatcgtcgtctgatgatgattatgaatccgacgactcg
catgactttgtgtcttcttttgaaaagcgtgagcctcccaagaaacgacgtcgtccaagg
aagaatcctgtcgtgggcgtctctgtcatccatactccaaatgttgtttaccctgcacaa
ccaaccagcatcaacagaccgtgtccatatgaaccttccaagaaactaaatcgtgtgatg
ccggttgatggcctgcttcatgctccaggaaatgctgcaaagccaattgcctaccctcca
ccagccacagttggcgtcaacagacatccgtggaagaatcctgtcgtgggcgtcactatc
atccatactccaaatgatgtgtaccctccgtcacctgctcccaaactgatgggagctcca
ttggtgcatgcccttgcttctaaagagccagctcatccactaactttaaacacagtgcct
tcgattcataaaccaagtcttcctgttactactgacgtttcgtctgtgccagtaaaggtt
gaccctccaccatattatgtaccaaagtcaaatacagctccaccaaatgcccaatcaaac
gctgcttcacataatacttctgccacatcgtcggtacttccaaaagttttgcatgtgtta
cctccacagccaacttatgatcgtcagtgtcagccaatcttggtgccaccgattccgccg
caggatgaagatttggatgctcttgtcgtatcaaagggtgcagagaagactattgcgcgt
tacttcttggaaggcgacttgtttgttcgtgataccaaagccagtgacgccgatggctcc
aaaggagatgcagccttcgatggtgaagttggcgtgagtgttagcgaggacttctcggct
catatgatacctatcaaacagctgaggaagggtatcccatatcaccacctgtcgcttgaa
gctaagctcacgatgctagagttccttcttgatgatcttttgacagtaccagagattgca
ggcgaaatgacgaggcgtcatcagattactgactcgattgaacttccctacggtggtcct
cctcctctttcgcatgagtttgccgagatagtcaacgatgatgaatgtaccgtgtgtgga
atagagggtgatttgctttgttgcgacggatgtcccggaagctttcatagacagtgcatt
ggtgtggcgagactgccagagggcaaatggttgtgtcctgaatgtaagacggtggatgcg
acaaaacttgctcctcttggatcggacaggaggccattcatcggttggtttacgtttgac
gagctgaaagaaggcatagaaaggccgatgattacggaacagcagtcagatcctatctat
gaaacacaaacagtcctacccactgcaccgcaatcacctcctgggttcccagctacgttt
ccaccacatctccaccccaacgaacttatgacgcatcctgctcagcaaataggtaatccg
cagacgtgtcctgcacaaatgaacccaaatcaacagacgacaattagcaaccaagccaat
gcaaactctcaggcggttgcgaatagtgatgtgggggagatccaatgcaaaatacccaag
gacgtggaactgcttgtctctgctggaaaggtatttgctcgatatcgttcatcacttcta
ccgtttgatccaatcgaacctggtcaatctctagaatctactgctgtgagtttggcgacg
atgaaaccacccgttcctttgaactgtgctcaactcacagagttattgaagctgctgggg
ccaaagatgtgcttgctgcctccgtggattcgtctctcgttcagtccgagaaaactattt
gttgatgcttctccaaacgcaatccagcccggaatggtggagtcaatcaacaaactaatc
gccttcaaaaacgaagagagactaatggcagtggcgtcgaactctgcggaaatcaacaac
gcaatgctctacgagaacaagttccgcagagcaccggcagatgtgttggtacagcaccag
cttgggcagttcatcctacctgcacaaatgtctgacataatatcgcatacgacaaaagta
ggggggctaactaatgcttctttggatcccacggctgagcaggttccctcagtgagaatt
cactactttgacccgttgctgtcactgtgtgacaaaatggtgaccttcgaacgactcttt
cgcgatgcttacttgcttgatgatagatggggaacaaatggagatgaaatggacgattac
ggatggagtcatcgagtcaggagtgcttcgtctatcactgagctggctgctcttttggtc
aagctggttgatgcttgttctttacgggcattccacctcaaatggttcgcagtgaaagac
aacggaaatgatgaagaggttgctaggttatccgaaggtcagagcgagccttccgctttg
gcagacgactggactttggagaaagagcaacatcgtcgtaaatgggagcgttgcactggc
gcatttattcttcgtttgttgaaagatgacggtatagcagacaagattttcgaggagggt
gattctacaaccaagcgtggaaagaaacaaaaactggtgaatgataatccaaatgcagcc
accgccggtacttcttcttccgaattgacgaacatcttcaatgacgttgccaatgatcag
atagcaagccaagccactattaatgacgttaagaaggaaatatcatctccttctgcggat
ccagtgacatcaactaacgagaagttgcccaaagctgacggcattggtgtggtcgagagt
gaaatgcataacaactctgccgagctagtgaagagtgactcagttgcaggtgctacttcg
gaggtgcactcatttccagcaatgttgacagcgaagaatgatgctgcgagtgatgatgtt
tgtatgaatgaggttgatgagccattgcggatgcgaggaggaggcccagaggatgagccg
ataaagggtagcagtgacgcttcatctgcaatgaaccagtcagacacggcttcggcaact
ccggtatcaaggggtctaccctcatcatcagttggaatacagtcgcctacaaagcgttgt
ggaaaatgcgaaacatgcctgcaagtggattgtcgcacctgtattttctgcctggatatg
ccacgatatggagggccaaacatccgcaagaaaagatgcatgatgaagaagaactgtctg
tatcaagacgaggagacaagcagatccgataaccctgacggtgtcattgttgatcagcct
ccaaagaaaagaggcagaggaaggccacgaaaagatgggaaagagtcagtacctcgtcag
aagctagcgacggcccaaaagcctccaaagccaaagtcgacgaagaagagacgtcaaacg
attgatgctgttccacatatgccatcaaactcaaggcgtcgctctggtcgcttaaacatc
gtcaggcatcagattgaaactctactgggtatcaacgaaggccaagttacgagcaagatt
gagaaagcgatcaatgatgtaaagattgacaagcttgaggagctttttgcggagtcagac
aagacgtcttactttgccatcgctggcagaaagctgtttgagccagaaggaacagtatca
tctcatattgccaagagacttgggagaaacgcaggctcaatccgtgcaccctcaattgca
tacgaaactcagtttgaagttggtgagagtgccacgtgccatcattggagaacgatgacg
ttgcagtcaaaaacgtacgaagagttgtactacagcgttcggttcctcgattcacacatc
gataagggggtattgtcgtcgtgcagtgctattgcggtcagaagagccaacgcgaagaag
aacaatcctaccacaacctttgccacggcagttcgttgcgaacaacgtgatccaatgact
ggtttgaacgagtactttgttgtacccgtagggaagaatcgtggcacgtggcagtcggaa
gtcagtgttgacctatcttccttggtgcagtaccgatttgacagaatcagttccttcgga
cagccaaaagaagagctcagtcgtcaacgaagaatgaaagagcaggaagccgaaaaagaa
cagatggagatcaaaaggaaagcagaagcagctgccaagcaattggagcttgaacgtcat
cataaggcagccattgagagattgactgagtactcacagccaaagccaacaattaacact
gatcttattcgtcgatgtcagatggatatccaggctgcattcgaccgtcacaaggaagaa
acgcttgagctgttagtatcatctgcgtcgcgaggagagaagcaggtatctagcgctgaa
atggctaagacacgacagagaaacaagactgcaatggctgctcccagcaacatgcttcgt
tcagctggaggcagatccctgtctgacatagagttgactcagaagatacaactcgctgaa
aatgcagctgttcggatgtacactgaaagagcaaggaagaaagcggcggcacccaagccg
aaaccaaagccggaggcacagccttctcgtcctgctacgaaaagaaccaacccgctacct
aatcaggctttcgtggtcgggatgatttctaaattgaatcagctgcatccacaacagcag
acacggccacagcagcaaccaccgatggaatacaatacgaccatgcaaatcaacccacaa
tgttaccaacagaattttaatgcgcaatactctcaaggaggcaacattacaaacaatgca
atgcagatgcaatccgccaacggtggattccgcatgctcctcaggttcagatgttcgaca
acaacaatcagtttggacaacaagggggctcgtacaatccacaacagcgacatgcgatat
cccgattatcacgaagatttgacacctgactcacctcacaactcaccaccaacaaacatg
aagtccttcctcgccctcctctccatcgccaccctctcctcctcgcatgcctttcatgca
tcggctcctctccctatcgccgcttcctctcgcgtaggaagtaggagcacaagtgtctct
ccccaatctcaggacggtgacgcatcaaccattgacacatcaaatgcacaatctccactc
tccaatgttgctaccgtattcgcctctaccgttgcggtgggtgtcatgcttctatcaacc
gtgggaagtacagcatgggcagtgagtggagggggactggattatgcgggtattgacatc
tcgggacaagactttagtaatgccagttacaagggaaaagacttcacacaggtaaacaca
aactttgaaggagcagacgtccgaggagtatccttcgaggacacctcaatggacaacgct
aacctcaaagatattgtcgctgtaggatcctacttcggccaaagcttggtagatgtgaag
actttggagaatggtgatttcaccgatgcgacaattcctccaaagactttgaagctggtt
tgtgatagggaggatgtaaagggtacaaatcctacgaccggagctgacaccagggatagt
ttgatgtgtttgtag
DBGET
integrated database retrieval system