Thalassiosira pseudonana: THAPSDRAFT_25248
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Entry
THAPSDRAFT_25248 CDS
T01078
Name
(RefSeq) predicted protein
KO
K06316
oligosaccharide translocation protein RFT1
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tps02000
]
THAPSDRAFT_25248
Transporters [BR:
tps02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
THAPSDRAFT_25248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rft-1
CEP104_N
CEP104-like_TOG
Motif
Other DBs
NCBI-GeneID:
7444201
NCBI-ProteinID:
XP_002294478
JGI:
25248
UniProt:
B8CE33
LinkDB
All DBs
Position
17:complement(273298..277418)
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AA seq
1272 aa
AA seq
DB search
MASSSTAATSAAARGTLLSVLLRLTSFLLSQLTVRHVSVSTLGKANIVLELLLGTALFVG
REGFRLGLTKNIAGVANGSSGEEEKEDANGASPGDGGVPTKRKFQQHESYLDENKKENRQ
RDEQQMQQQRIINVSWLSVPTGAVMSILAVLMHLYSCSSNNNTSNANASEMMDYKLAGIL
YCIASFIESLSEPLVIRCLQEMDVTTKAKAEGAALVCKAVACFGMLHLTSSVWFWEAMKT
IATRLELGVGGSGGQVCFAVTAFGVSQLVYAITFTTIMFRKARATKDGIRWPKRIHPFVS
NPYRSDDTTAHQTQSGTTPLTQNFDLHTLHLILIFTLQGLFKHALTEADKIVLSTLAGSY
DQGVYALASSYGGLAARLLLQPLEENARLLFSRQGALLAQQLQDATTTNGSREKDTQQYE
KKQTIGGGPNNLLSDLESTYCFLLRAVLYIGLIFATIATNYTSLLLRILAGDRWGSNSEA
SAALSAFCVYTAFLALNGTTEAFVYGVARSGRDVGKLGVAHAVVGGIFALISPGLVRSKG
AVGLVTANCVCMGLRSAYSLYYARTYFAKAEEALSGGKNDRISMISQIAPHPVVLALFSM
AYAVTKSSRDVLYDGALADGAVWTVAALTHVLVGILSLALTMTVSLYFESDIRASFPLLD
GNDLVPLPFNVVECSSEEHGCESSALHSYREDSNGWQSSCQGPTPHTLVLKIQHHDEERM
VHRLEILCHEYKVPEKVEIILASGCADEEIPSLFDECESILHLGYITMDPNERSDYQDRE
LKSIPIGKPADFIRLVIPRCHKNSLNPDNQVGIVGIKVLGVEAAIDDVSIEKEEEIVVVE
SENLILPTTTDEITEAPILNVALSPPLKKLHNILTPVSSLPSRIKHELDPKMQQSVDRLE
RFKKERAALEDFDTAAKAKEALGTVYALLITYKESESKMREAAAIEEYAEASRLKTERDT
MRKAAMQALSEVEQTFIEQREDAVEVLSISTIKDESFVSQRSARSIHPFSESEQYHEMGN
ISNTCSQSGANETCLEEHEEDRNDSGGEESEDDSNDSHPLSGVNDAEELPTPEEIDYESV
DVSSDLVKKVDHIFGEYRAKCFFSKNWQLREAALAKMTLLIPSVCGGSSAEECAEILCNI
VVRSIGDKNVQVYLAGLILLDESLLQFERSELPQTKITPLLSKIIIELLGKLAESKTKVV
DSAELSLLSIAHSSCVDISYICNAGTKRVKSTDSKGGRTVKARLQFMDNLIAEFGDEVGW
KRVLEFAKGKVA
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtcatccacagcagccacatcagctgccgcccgaggaacgctcctctccgtc
ctcctccgtctcacgtcattcctcctctcgcagctcactgtccgacacgtctccgtgtcc
accttgggcaaggcaaacattgtactggagttgttgttgggaactgctttgtttgtgggt
agagagggatttaggctgggattgacgaagaacattgccggcgttgccaatggtagtagc
ggtgaggaggagaaagaagatgccaacggtgcatctcctggtgatggtggtgtaccaacg
aagaggaagttccaacagcatgagagctatcttgacgagaacaaaaaggagaacagacaa
agagacgagcaacagatgcaacaacaacgcatcatcaacgtttcgtggctttctgtaccg
accggcgcagtaatgtcaatacttgcagtgttgatgcatctctactcgtgcagcagcaac
aacaacacaagcaacgctaatgcatccgaaatgatggactacaaactagccgggatatta
tactgcattgcatcctttattgagagtctatccgaaccactggtgatacggtgcttgcaa
gaaatggatgtgactaccaaggcgaaggccgagggggctgccttggtctgcaaggctgtg
gcatgctttggcatgttgcatttgacaagcagcgtttggttttgggaggctatgaaaaca
atcgcgacacggttggagttgggagtgggaggaagtggaggccaagtttgctttgcagtg
actgcctttggagtctcgcaactagtgtatgcaatcacctttacaacaatcatgtttcga
aaggcgagggctacgaaagatggaatacggtggccaaaaagaatccatccattcgtatca
aatccctaccgcagcgatgacacaacagcccatcaaacacaatcaggaacaacaccctta
acacagaactttgacctccacacccttcatctaatactcatctttacactacagggattg
ttcaaacatgcattaacagaagcagacaagattgttctctcgacactggcaggatcgtat
gatcagggagtatatgcactcgcttcttcgtatggagggttggcggcacgtttgttgctg
cagcctttggaggagaatgcacgtctgctgttttctcgtcagggggcattgttggcacaa
caactgcaagatgctacgacgacaaacggtagcagagaaaaagatacacaacaatatgaa
aagaagcaaacaatcggaggcggaccaaacaatctgctcagtgacctcgagagtacctac
tgcttcctccttcgagcggtcctttacattggattaatctttgcaaccattgccacaaat
tacacttccctcctccttcgcatcctcgccggagatcggtggggatcaaactccgaagcc
agtgcagcactatctgcattctgtgtctatacagccttccttgccctcaatggcaccact
gaagcattcgtatacggcgtggctcggtcgggaagagatgtgggtaaactgggtgtggct
catgcagtggtggggggaatctttgcattgatttctccaggattggtgaggagcaaaggt
gccgtggggttggtgactgccaattgtgtttgtatgggattgcgttcggcgtactcgttg
tactacgcgaggacgtactttgcaaaggcagaggaggcgttgtcgggaggaaagaatgac
agaatcagcatgatttctcaaatcgcacctcatccagtagtattggctcttttcagcatg
gcatatgcagtgaccaaatcttcgagggatgttctttacgatggagcacttgccgacggt
gcagtctggactgttgcagctttaacgcacgtgcttgttggtattttgtcattagctttg
acgatgacagtctctctgtactttgagtctgacattcgagcaagtttccctcttcttgat
ggcaacgacctcgttccacttccgttcaatgttgtagaatgcagcagtgaagagcacggg
tgcgaatcatcggctttgcatagctacagagaggacagcaatggatggcagtcgagctgt
caaggtccaacgccccacacgctagttctgaaaatccagcatcacgatgaagaacgcatg
gtgcacaggctcgaaatactctgtcatgaatacaaggttcctgaaaaggtggagattatc
ctggcaagtggatgtgcagatgaagaaataccatcgttatttgacgaatgcgagtccatt
ctccacctcggatacatcaccatggatcctaacgaacgatcagactaccaagatcgtgag
ttgaagagcatccctattggaaagcctgctgactttattagattggtcatcccacgatgc
cacaagaactcattgaaccctgacaatcaagtcggtatcgttggaatcaaagttttggga
gtagaagcagctatagatgatgtatcaatagagaaggaggaggagatagttgttgttgaa
agtgaaaatcttatcttgccgactaccactgatgagattacagaggcgccaattctaaat
gttgcactgagccctcctcttaaaaaactacacaacattctcaccccagtgagctctttg
ccatcgcgaatcaaacatgaattagatccaaaaatgcaacaaagtgtggatagactagaa
cggttcaagaaggaaagggcggcgttagaggactttgatacggctgcaaaagcgaaggaa
gctcttggaacggtgtatgctctcttgataacatacaaagaaagtgaaagcaagatgcgt
gaggcagcagcaatagaggagtatgccgaagcatctcggttgaaaacggaacgtgatact
atgcgaaaggctgcgatgcaagccttatcggaagtggagcaaacgttcattgaacaaagg
gaggatgcagtagaagtactttcaatcagtacaatcaaagacgaaagcttcgtctctcaa
aggtcagctcgttcaatccaccccttcagtgaaagtgagcaataccacgaaatgggaaac
attagcaatacatgttcacaatcaggagccaacgagacatgtctggaggaacacgaggag
gatcgaaacgactctggtggcgaggaaagtgaagacgacagcaacgactctcatccgttg
tcaggtgtgaatgacgctgaggagttgcctacgccagaggaaatcgactatgaaagcgta
gacgtctcgtcagatcttgtaaagaaggttgatcatatctttggagagtaccgagcaaag
tgtttcttctccaagaactggcaactgcgtgaggcagcactggctaaaatgacgcttctc
attccttctgtttgcggaggttcgtcagccgaggaatgcgctgaaatattatgcaatatt
gttgttcgttccattggcgacaagaatgtccaggtctacctcgcaggacttattctcctt
gacgaatccctactgcagtttgaacgaagcgaattgccgcagaccaaaatcacacctctg
ttatcaaaaatcatcattgaactccttggaaagctggccgagagcaagacaaaagtcgtt
gatagtgcagagctgtcgttgctatcaattgcacattcgtcttgtgttgatatttcctac
atctgcaatgctggtacgaagcgagtcaaatccacagattccaaaggtggccgtactgta
aaggcacgtcttcaattcatggacaatctcattgctgaattcggagacgaagttggatgg
aagcgagtcttggagtttgcaaaaggtaaggtagcatga
DBGET
integrated database retrieval system