Thalassiosira pseudonana: THAPSDRAFT_2538
Help
Entry
THAPSDRAFT_2538 CDS
T01078
Name
(RefSeq) serine threonine phosphatase
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
THAPSDRAFT_2538
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tps01009
]
THAPSDRAFT_2538
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_2538
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_2538
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_2538
Enzymes [BR:
tps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
THAPSDRAFT_2538
Protein phosphatases and associated proteins [BR:
tps01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
THAPSDRAFT_2538
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
THAPSDRAFT_2538
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
THAPSDRAFT_2538
Spliceosome [BR:
tps03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
THAPSDRAFT_2538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Motif
Other DBs
NCBI-GeneID:
7444682
NCBI-ProteinID:
XP_002287871
JGI:
2538
UniProt:
B8BUN0
LinkDB
All DBs
Position
2:complement(1234618..1235693)
Genome browser
AA seq
317 aa
AA seq
DB search
MEPIQNIAQRLLSLRGSPPGTLASLAENEIKLLCQRVRPILLAQPMLLELEAPLKICGDI
HGQFTDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLEAVCLLICYKIMYPENFFILRGNH
ESAGINRIYGFYDECKRRYSIRLWKVFSDVFNCLPVSAIVDEKILCMHGGLSPEMERLQQ
IADLQRPCDVPDVGLMCDLLWSDPDTGVNGWAENDRGVSFVFGADVVAAFLEQHDLDLLV
RAHQVVEDGYEFFAGRRLVTLFSAPNYCGEFDNAGGMISVDENLMCSFQILKPSSRAARF
AQRNQQGGPGQNGIQGS
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggaacccatccaaaacattgcacaacgtctgctctctctccgcggctcacctcccggg
acactcgccagtctcgccgagaatgagatcaaactcttgtgtcaacgcgtacgtcccatc
ctcttggcccaaccaatgttattggaactagaagcgccgttgaagatatgcggtgacatt
catggacaattcacagatctcctaaggttattcgaatacggaggcttccccccagaaagc
aactatctctttctgggtgattatgtcgaccgcggcaagcaatccctcgaagcggtctgt
ctcctcatttgctacaaaataatgtaccccgaaaacttcttcatccttcgtggtaaccac
gaatcagctggcatcaaccgcatctacggattctatgacgagtgcaaacgtcgctattcc
attagattatggaaggtgttcagtgatgtgttcaactgtttaccggttagtgcgattgta
gatgaaaagattttgtgcatgcatggggggttgagtccggagatggaacggttgcagcag
attgcggatttgcagaggccgtgtgatgtaccggatgtggggttgatgtgtgatttgttg
tggagtgatcctgatacgggggtgaatggatgggctgaaaacgacagaggggtgtcattc
gtattcggtgccgatgtagtagcagcctttctagaacaacacgaccttgaccttctcgtc
cgagcccatcaagtagtcgaagacggctacgagttctttgcgggtcgtcgtctcgtcaca
ctcttttcagcaccgaattactgtggagaatttgacaatgccggtggtatgatttcggtg
gatgagaacttgatgtgttcctttcagatattgaagcctagttcgagggcggcgaggttt
gcgcagaggaatcaacagggtggaccggggcagaatggaattcaggggagttag
DBGET
integrated database retrieval system
