Thalassiosira pseudonana: THAPSDRAFT_25686
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Entry
THAPSDRAFT_25686 CDS
T01078
Name
(RefSeq) predicted protein
KO
K09291
nucleoprotein TPR
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_25686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_25686
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
THAPSDRAFT_25686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
APG6_N
Motif
Other DBs
NCBI-GeneID:
7443668
NCBI-ProteinID:
XP_002294807
JGI:
25686
UniProt:
B8CF92
LinkDB
All DBs
Position
22:96858..103994
Genome browser
AA seq
2221 aa
AA seq
DB search
MSSNKGSNAADGGGDDGKKDTAQPPPAAEVVNVDDGSDATPAAPNSTAKGDDGKDAAKEA
AAAAMMSLEQGTADADAAATMSPPPSKSATTPRLAGFADATPSWKKTFAAGPSLKGFADA
KKKATSPVKKVAASAPSVVAGIKRPTMVSAVANKTPPNASSTVAAKSPGKSPPSTVATVV
GGKSPSTTTTAAAVSTGGGGGGGAPQQSGETTVPNTLDVVMVDSTSPAKKAGGNAAVVTT
DTTAPPPTTATTNNTARLHSLSLNTTALLSTLESKYATLQSSHSTLTTSLSKSIADNTQL
TSKLRELQQMLDLKEKEGKEEVQRLTGVVEREKSGRMEFERKLRHCEERVDRLEAEGDGL
RNEISRLTQSNEQYTTLLNQVQSQHSLSTSTVIPLKLEITRLKQELDATTSHSNYVDSEL
ASRNETISTLKNGHASEVRTLRGELDHVKLELAQRQRELSSSRMGMESSLSELEKIRCKL
QEKEYAFAEEREVMQQDLNKERELVTLKEQRMLLAEDQRDSLMREVESLKVLAREAEEES
MGKDAELQRRLAEGVESAVRKVREHEEERRLRLEERLAVAEEAKQKFEEDILNKNTPLRR
RRRMITEGGEQMISLAITDGDVMEEGPLSLTDIYTRLAETEDDLRAEQHENKKLKILIER
IHRDVASKTPIFHQKQMELESALDEMHDMKERLDYARREVMDIRADNQDLEVKNQQMERE
CQALRRENVDLATQVQRLLQRGSGGGNAAGFGGDDVVTFDSVQTLQQQNQNLLRDHHTMT
DKIQTLENHITNNPEKIELDQLKEEVVTLREEREKQSKLVAGIVHQRDLYRALVAKNDAP
LIESGAGEHQLAIADARAEQLPMIEAKNRELVEEVAKLRADVSCSKHEMEALEGRLARVD
AHADELTTSNERLRGELTAANATVARMTIDVSHYTGKCERFEASLEAVKGERDSESRGRN
QLEELNNKLQTHLEAARSELARKQQQFETASSKMRLLEVQLQNAKSAEERITSEANELRS
EIARQGALLASVQRIEASLAAKSEGERDHLAAEVQRLSESISGDATKHSATVQKLEGKVA
DLELSVKDLSSQKEASAASAAKANLEVSKLKLKIEEINLKSKTAEKELVAAKRKLGGVAI
DNSVEEALEAKVATLTAELETTKLDLKKAKERVVNFQNIAKASAEQVVELTAASTKYKDE
TTANLERLKKAEQFQREAVTELTNDLMAHRGEKDKAVNDLKAKIDSLTVQLTGAKEDASK
ATARMESIMSEMKCYQLNATNAQNNYERELALHAEARTSLRDARALAESEQRLRETAEAT
LDSTKAEFDSEKSAWEAEKLRLEGSVQEAKSRLDDLRSQNNILFDQMTSLSTTVDKFQSD
KASELVDDGSGGDSGDKQLSNLRELLRFKQTECAMLEADLASAKRATERERTAADLAKRS
LEAARSELKVSRESAQGGDSGASEKELDELRSKLKTAEEQLVLIRESNTMLRKESQKVTK
KLAEVQTELDSAKTSASPQKDKLAAMEVEKASLLAEKDSLSREVDAWKNRVHSLVSKFNQ
IDPEEHAQALARVEQMKEECKSLKGLKDKAEKDSSSAKGLVAQLNKEISSQKASMDAFKT
ALEKTKAEKEKLSKAAQLNDSKKVAEAQAALKASKAELDASNARLSNFKDMLRKMQVGLK
SAKDAEDKAKSTEKALQKEITELKHKLAVAESSQTKGGESATEAKFEDQTPVVEQPKTVA
TETPAVPEKKIETTTTTTTTASDVIKPNETADATKATPVVDATEAAPSVEEKQSEVAASS
EMKVDASEKAPVAATKKKGKKRKAAVPQKNAAPSYSSSAPPQKKSATQDAAASANASGEK
TGASESIESTTPTKQAPVPPKKKIVLKKKAAAKETPASTPAAVIQIAPAATAKTTAASTK
EEEMKLKMLLLKKRKAEAAQRLQVAKKKKETEAIETAAAVEESEKISKESAPSIVSASED
TSKESESNDKPVAKAVPALSSPKPLPPVPEKDEPKEEMKEPTTAAVNDKKDTADIGSSTS
VAGATGVGGIPAAVPPAVEPDCPKPSFFGESYAAPSTKSIFVGGAVKPSNEAKKAESPDA
GAQPAAAKGAFLNLTPPGKAKAAQFVFGNSANITLPVPASSPFGVFSGIQKTTMGSTPFG
SGFGGIATPFGGQKASAAGEEQKKEDSGAATETTQPDEKKEKGEVAEEECATKRDPVAKK
A
NT seq
6666 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaacaaaggcagtaacgcagcagatggcggtggcgatgatggcaagaaggac
acggcacagcctccaccggcggcggaggttgtgaatgttgatgatggttccgatgctacc
cctgccgcccccaacagcactgccaagggtgacgatggtaaagatgcagcgaaagaagca
gccgccgctgcaatgatgtcgctcgaacaaggcaccgctgatgccgacgctgccgctacg
atgagtccgccaccgtccaaatcagccaccactccccgtctagcaggattcgccgatgca
actccttcgtggaaaaagacttttgctgcgggaccttcgttgaagggattcgcggatgcc
aagaagaaggcgacttctcctgtcaagaaggtagccgctagtgctccatctgtcgttgcc
ggtatcaagaggccgacgatggtgagtgcggttgccaacaagactccacccaatgcatcg
agcactgtggcggctaaatctcctggtaaatcgcctccatcgacggtagctactgttgtc
gggggtaaatctccatctacaacgacgactgctgccgcagtgtcaacgggaggaggagga
ggaggaggtgccccccaacaatcgggggaaacgactgtaccaaatactcttgatgttgtc
atggtggatagtacgtctcctgcaaagaaggcagggggaaacgccgccgtcgttaccacg
gacactactgctccaccacccacaactgcaaccacaaacaacacagcacgcctccactcc
ctatccctaaacaccaccgccctcctctccacactagaatccaaatacgccaccctccaa
tcatcccattccacactcaccacctccctttccaaatctatcgccgataacacgcaactc
acttctaaattacgtgaattgcaacaaatgttggacttgaaggagaaagagggtaaggag
gaggtacagaggttgacgggggtggtggaaagggaaaagagtgggagaatggagtttgaa
aggaagttgaggcattgtgaggagagggtggatcgattggaggcggagggggatgggttg
agaaatgagattagtcgcctaacccaatcaaacgaacagtacaccaccctcctcaaccaa
gttcaatcccagcactccctatccacatccaccgtcatacccctcaaactcgaaataacc
cgtctcaaacaagaattggacgcgaccacctctcattccaactatgttgattcggaacta
gcctcacgcaacgagaccatttccaccttgaagaacggacatgcttcggaagtacgaacg
ctaaggggagaattggaccatgtcaagttggaattggcacagcgtcaacgcgagttatcc
tccagtcgcatgggtatggaatcgtcgttgtccgagttggaaaaaatacggtgcaagctt
caagagaaggaatatgcctttgccgaagaacgggaggtgatgcaacaggatttgaataag
gagagggagttggttactttgaaagagcaacggatgttgcttgcggaagatcaacgtgat
tcattaatgagggaggtcgagagtctaaaggtgttggcacgagaggcggaagaagaatcc
atgggaaaagatgcagagttgcaacgtcgtcttgcggagggtgtggagagtgccgttcgt
aaagtgcgtgagcatgaggaggaaaggagattgcggttggaagaacggttggctgtggcg
gaggaggcgaagcaaaagttcgaggaggatattttgaataagaacacgccgttgcgaagg
aggaggagaatgattacagaggggggagaacagatgatttccttggcaattacagatggt
gatgtcatggaagagggaccgctcagcttgaccgatatctatacccgtcttgccgaaacg
gaggatgatttacgcgcagagcagcatgaaaacaagaagctcaagattctcattgaacgt
atccatcgtgatgtggctagcaaaactcccatctttcatcagaagcagatggaattagag
agtgccttggatgaaatgcatgatatgaaggaacgattggactatgcccgtagggaagtt
atggatattcgtgccgataatcaggatttggaggttaagaatcagcagatggagagggaa
tgtcaggcgttgcgtagggagaatgtggatttggctactcaggtgcaaagattgttacaa
cgtggatcgggaggtgggaatgctgctgggtttgggggagatgatgttgtcacgtttgac
tcggttcagactctccagcaacagaatcagaacttgcttcgtgatcatcataccatgaca
gataagattcagacgttggagaatcatatcactaacaaccctgagaagattgagttggat
cagctcaaggaagaagtagtgacattgcgtgaagagcgagagaagcaatccaagcttgtg
gctggtatcgttcatcaacgtgatttgtaccgtgcattggttgccaagaatgatgccccc
ttgattgaaagtggggcgggtgagcatcagcttgccattgcggatgcgagggcggagcag
cttccaatgattgaagctaagaaccgtgagcttgtagaagaagtagccaagttacgtgca
gatgtatcgtgttccaagcacgaaatggaggcgttggagggacggttggcgcgtgtcgat
gctcatgccgacgaactgacaacctcgaatgagcgtcttcgcggagagctaacagccgca
aacgccaccgtggctcgcatgacgattgacgtctcacattacactggaaagtgtgaacga
ttcgaagcgtcgttggaagccgtcaagggtgagagggattctgagtctcggggaaggaac
caattggaggagttgaataataagttgcagactcatcttgaggctgctaggtcggaattg
gccagaaagcagcagcagtttgagactgcttcctcaaaaatgaggcttcttgaagtgcaa
ctccaaaatgccaaatccgccgaagaacgaatcacttcggaggcgaacgaattgcgttct
gaaattgcacgacagggtgctttgcttgcatctgtgcagcgtattgaggctagtttggct
gccaagtccgagggagaacgtgatcatcttgcggcagaagtacaacgccttagtgaatca
atctcgggtgatgccacaaagcattcggcgacggtgcaaaagctggagggcaaggtagct
gacttggagctcagtgtcaaagatctcagttcgcagaaagaggcgtctgcggcgagtgct
gccaaagccaatttggaagtgtcaaagttgaagctaaagattgaggagatcaacttgaag
agcaagactgccgagaaggagcttgtcgctgcaaaacgcaagttgggaggtgtcgccatt
gacaatagcgtagaggaagcattggaggcaaaggtggccacgttgactgctgagctggag
actaccaagttggatctgaaaaaggcgaaggaaagagttgtcaacttccaaaacattgct
aaggccagcgcagagcaggtcgtcgagttgactgctgcgtccacgaaatacaaggatgag
acgactgctaacttggagaggctcaagaaggcggagcaatttcagcgagaggcagtcacg
gaattgacgaacgatctcatggctcatcgtggtgaaaaggataaggctgtgaatgatttg
aaggcaaagattgactctctcaccgttcaactcacaggtgcgaaggaggacgcttcaaag
gccaccgcaaggatggagtctataatgtcggaaatgaaatgttaccagctcaatgccacg
aatgctcagaacaattacgaacgggaacttgctctacatgctgaagcacgaacttctctt
cgtgatgctcgtgcactagctgaatcagagcaacgtctccgtgagacagctgaagccact
cttgattccactaaagcagagtttgactcggagaagagtgcatgggaagcagaaaagctc
agactcgagggatctgtgcaagaagcgaagtcaaggcttgacgatttgcgcagtcagaac
aacatcctctttgatcaaatgacgtctctgtcaaccacggttgataagtttcagtcggat
aaggcatctgaacttgttgatgatggatctggaggtgactcgggtgacaaacaactttct
aatcttcgcgaacttcttcgcttcaagcaaaccgaatgcgccatgctagaagctgacctc
gcatctgccaagcgagcaacggaacgtgagagaactgccgcagatttggccaaacgaagt
cttgaggcggcgaggtctgagttgaaggtttcccgtgagagtgctcaaggtggagactcg
ggagcatcagagaaggaactggatgagctccgtagcaaactcaagacggccgaagaacag
ctcgttttgatccgtgaaagtaacaccatgctgcgcaaggagtctcagaaagttaccaag
aagttggccgaggttcagacagagttggatagtgccaagacttctgcctctcctcaaaaa
gataagttggctgctatggaagttgaaaaagcatcgttgttggccgagaaggatagtcta
tcacgtgaagtggatgcgtggaagaatcgtgttcacagtcttgtgtccaagttcaatcag
attgaccccgaagaacatgctcaggcacttgctagagttgaacagatgaaggaggaatgc
aaatctctgaaggggctcaaggacaaggccgaaaaggattcatcctctgccaagggattg
gtggcacagttgaacaaggaaatatccagtcaaaaggcctcgatggacgcctttaagact
gcacttgagaagactaaggccgaaaaggaaaaattatccaaggcagctcaattaaacgat
tcaaagaaggtggccgaggcccaggctgcgttgaaggcttcgaaggctgagttggatgca
tcgaatgctcgactgtcgaacttcaaagacatgctgcgaaagatgcaggtcgggcttaag
agtgcaaaggacgcagaagataaagcaaaatcgacggaaaaagctcttcaaaaggaaatc
acagagttgaagcataagcttgctgtcgctgaatcgtctcagacgaagggtggtgaatct
gcaaccgaggcaaagttcgaagatcaaactccagtggttgagcagccaaagactgtcgct
acggagactccagctgttccagagaagaaaattgaaactacgaccaccaccacaacaaca
gcatccgatgtgattaagcccaacgaaacagcagatgccaccaaagctactcctgtggtt
gatgcgacagaggcggccccatcggttgaggagaagcagagtgaagtggcggcttcctct
gaaatgaaagtagatgcttctgagaaggcaccggttgcggccactaaaaagaagggcaaa
aagcgcaaggctgcagtccctcaaaagaacgctgcacccagttacagctcatcagctcct
cctcaaaagaagtctgccacccaggatgcggcggcgagtgccaatgcatcgggcgaaaag
acaggtgcctctgaaagcattgaaagcactacccccacgaagcaggctccggttcctcca
aagaagaagattgtattgaagaaaaaagctgcagccaaagaaactcctgcatccacgcct
gccgctgtcatacaaatagcacctgctgccactgccaagacaactgcagcgtctacgaag
gaggaagaaatgaagttaaaaatgctattgttgaagaaacgtaaagcagaggcagctcaa
cgactccaagtcgccaagaagaagaaggaaactgaagccattgagactgcagccgctgtt
gaggaatctgaaaagatatctaaggagtctgcaccgtcgattgtctcggcgtcggaggac
acatcaaaagaatctgagtcaaatgacaaacccgttgcgaaggcggtccctgctttgtcg
tcgccaaagcccctcccacccgtccccgaaaaagacgagccaaaggaggagatgaaggaa
ccgactactgctgccgttaatgacaagaaggacactgctgacattggttctagtaccagt
gttgctggcgctacgggagttggaggcattcctgcggctgttcctcccgcggtcgagcct
gactgtccaaagccatcgttctttggcgaatcatatgctgctccttcaactaaatcaatc
tttgttggtggggctgtaaagccatcgaacgaagcaaagaaggcagaaagcccggatgct
ggagcccagcctgctgccgcgaagggtgcattcctaaacttgacgcctccgggaaaagca
aaggctgcacagtttgtatttggaaattcggccaatatcacgcttccggtgcctgctagt
agtccattcggtgttttcagtggtatccaaaagaccacgatgggttcaacgccatttggg
tcaggatttggtggtattgcaactccctttggtggacagaaagcgagtgccgccggtgag
gagcaaaagaaggaagattctggtgctgcgactgaaactacacaacctgatgagaaaaag
gagaagggagaggttgcagaggaggaatgtgcaacaaagagggatcctgtggcaaagaaa
gcttaa
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