Thalassiosira pseudonana: THAPSDRAFT_25687
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Entry
THAPSDRAFT_25687 CDS
T01078
Name
(RefSeq) predicted protein
KO
K09291
nucleoprotein TPR
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_25687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_25687
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
THAPSDRAFT_25687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
APG6_N
Motif
Other DBs
NCBI-GeneID:
7449477
NCBI-ProteinID:
XP_002294810
JGI:
25687
UniProt:
B8CF96
LinkDB
All DBs
Position
22:116306..123474
Genome browser
AA seq
2232 aa
AA seq
DB search
MSSNKGSDAAGGGGDDGKKDTAQPPPAAEVVNVDDGSDATPAAPNSTAKGDDGKDAAKEA
AAAAMMSLEQGTADADAAATMSPPPSKSATTPRLAGFADATPSWKKTFAAGPSLKGFADA
TKKATSPVKKVAASAPSVVAGIKRPTMVSAVANKTPPNASSTVAAKSPGKSPPSTVATVV
GGKSPSTTTTAAAVSTGGGGGGGAPQQSGETTVPNTLDFVMVDSTSPAKKAGGNAAVVTT
DTAAPPPTTATTNNTARLHSLSLNTTALLSTLESKYATLQSSHSTLTTSLSKSIAENTQL
TSKLRELQQMLDLKEKEGKEEVQRLTGVVEREKSGRMEFERNLRHCEERVDRLEAEGDGL
RKEISRLTQSNEQYTTLLNQVQSQHSLSTSTVIPLKLEITRLKQELDATTSHSNYVDSEL
ASRNETISTLKNGHASEVRTLRGELDHVKLELAQRQRELSSSRMGMESTLSELEKIRCKL
QEKEYAFAEEREVMQQDLNKERELVTLKEQRMLLAEDQRDSLMREVESLKVLAREAEEES
MGKDAELQRRLAEAVESAVRKVREQEEERRLRLEERLAVAEEAKQKFEEDILNKNTPLRR
RRRMITEGGEQMISLAITDGDVMGEGPLSLTDIYTRLAETEDDLRAEQHENKKLKILIER
IHRDVASKTPIFHQKQMELESALDEMHDMKERLDYARREVMDIRADNQDLEVKNQQMERE
CQALRRENVDLATQVQRLLQRGSGGGNAAGFGGDDVVTFDSVQTLQQQNQNLLRDHHTMT
DKIQTLENHITNNPEKIELDQLKEEVVTLREEREKQSKLVAGIVHQRDLYRALVAKNDAP
LIESGAGEHQLAIADARAEQLPMIEAKNRELVEEVAKLRADVSCSKHEVEALEGRLARFD
AHADELTTSNERLRGELTAANATVARMTIDVSHYTGKCERFEASLEAVKGERDSESRGRN
QLEELNNKLQTHLEAARSELARKQQQFETASSKMRLLEVQLQNAKSAEERITSEANELRS
EIARQGALLASVQRIEASLAAKSEGERDHLAAEVQRLSESISGDATKHSATVQKLEGKVA
DLELSVKDLSSQKEASAASAAKANLEVSKLKLKIEEINLKSKTVEKELVAAKRKLGGVTI
DNSVEEALEAKVATLTAELETTKLDLEKAKERVVNFQSIAKASEEQVVELTAASTKYKDE
TAANLERLKKAEQSQREAVTELTNDLMAHRGEKDKAVNDLKAKIDSLTVQLTGAKEDASK
ATARMESMLSEMKCYQLNATNAQNNYERELALHAEARTSLRDARALAESEQRLRVTAEAT
LDSTKAEFDLEKSAWEAEKLRLEGSVQEAKSRLDDLRSQNNILYDQMTSLSTTVDKFQSD
KASELVDDGSGGDSDDKLLSNLRELLRFKQSECAMLEADLASAKRATERERTAADLAKRS
LEAARSELKVSRESAQGGDSGASEKELDELRSKLKTAEEQLVLIRESNTMLRKESQKVTK
KLAEVQTELDSAKTSASPQKDKLAAMEVEKASLLAEKDSLSREVDAWKNRVHSLVSKFNQ
IDPEEHAQALARVEQMKEECKSMKGLKDKAEKDSSSAKGLVAQLNKEISSQKASMDAFRT
ALEKTKAEKEKLSKAAQLNDSKKVAEAQAALKASKAELDASNARLSNFKDMLRKMQVGLK
SAKDAEDKAKSTEKALQKEITELKHKLAVAESSQTKGGESATEAKVEDQTPVVEQPKTVA
TETPAVPEKKIETTTTTTTTASDVIKPDETADATKAAPVVDATEATPLVEEKPSEVAASS
EMKVDASEKAPVAATKKKGKKRKAAVPQKNAAPSDSSSAPPQKKSATQDAAASAKASGEK
TGASESIKSTTHTKQAPVPPKKKIVLKKKAAAKETPASTPAAVTNIAPAATAKTTAASTK
EEEMKLKMLLLKKRKAEAAQRLQVAKKKKETEAIETAAAVEESEKISKESAPSITSASED
TPKETESNDKPVAKAVPALSSPRPLPPVPEKDEPKEEMREPTTAAVDDKKDTAAVGSSTS
VAGATGVGGIPAAVPPAAEPDCPKPSFFGESSTTAAPTAIFGIAAPSTKSIFVGGAVKSS
NEAKKAESPDAEAQPAAAKGAFLNLTPPGKAKAAQFVFGNSANITLPVPASSPFGVFSGI
QKTTMGSTPFGSGFGGIATPFGGQKASAAGVEQKKEDSGAATETTQPDEKKEKGEVAEEE
CATKKDPVAKKA
NT seq
6699 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaacaaaggcagtgacgcagcaggtggcggtggcgatgatggcaagaaggac
acggcacagcctccaccggcggcggaggttgtgaatgttgatgacggttccgatgctacc
cctgccgcccccaacagcactgccaagggtgacgatggtaaagatgcagcgaaagaagca
gccgccgctgcaatgatgtcgctcgaacaaggcaccgctgatgccgacgctgccgctacg
atgagtccgccaccgtccaaatcagccaccactccccgtctagcaggattcgccgatgca
actccttcgtggaaaaagacttttgctgcgggaccttcgttgaagggattcgcggatgcc
acgaagaaggcgacttctcctgtcaagaaggtagccgctagtgctccatctgtcgttgcc
ggtatcaagaggccgacgatggtgagtgcggttgccaacaagactccacccaatgcatcg
agtactgtggcggctaaatctcctggtaaatcgcctccatcgacggtagctactgttgtc
gggggtaaatctccatctacaacgacgactgctgccgcagtgtcaacgggaggaggagga
ggaggaggtgccccccaacaatcgggggaaacgactgtaccaaatactcttgattttgtc
atggtggacagtacgtctcctgcaaagaaggcagggggaaacgccgccgtcgttaccacg
gacactgctgctccaccacccacaactgcaaccacaaacaacacagcacgcctccactcc
ctatccctaaacaccaccgccctcctctccacactagaatccaaatacgccaccctccaa
tcatcccattccacactcaccacctccctttccaaatctatcgccgaaaacacgcaactc
acttctaaattacgtgaattgcaacaaatgttggacttgaaggagaaagagggtaaggag
gaggtacagaggttgacgggggtggtggaaagggaaaagagtgggagaatggagtttgaa
aggaacttgaggcattgtgaggagagggtggatcgattggaggcggagggggatgggttg
agaaaggagattagtcgcctaacccaatcaaacgaacagtacaccaccctcctcaaccaa
gttcaatcccagcactccctatccacatccaccgtcatacccctcaaactcgaaataacc
cgtctcaaacaagaattggacgcgaccacctctcattccaactatgttgattcggaacta
gcctcacgcaacgagaccatttccaccttgaagaacggacatgcttcggaagtacgaacg
ctaaggggagaattggaccatgtcaagttggaattggcacagcgtcaacgcgagttatct
tccagtcgcatgggtatggaatcgacgttgtccgagttggaaaaaatacggtgcaagctt
caagagaaggaatatgcctttgccgaagaacgggaggtgatgcaacaggatttgaataag
gagagggagttggttactttgaaagagcaacggatgttgcttgcggaagatcaacgtgat
tcattaatgagggaggtcgagagtctaaaggtgttggcacgagaggcggaagaagaatcc
atgggaaaagatgcagagttgcaacgtcgtcttgcggaggctgtggagagtgctgttcgt
aaagtgcgtgagcaagaggaggaaaggagattgcggttggaagaacggttggctgtggcg
gaggaggcgaagcaaaagttcgaggaggatattttgaataagaacacgccgttgcgaagg
aggaggagaatgattacagaggggggagaacagatgatttccttggcaattacagatggt
gatgtcatgggagagggaccgctcagcttgaccgatatctatacccgtcttgccgaaacg
gaggatgatttacgcgcagagcagcatgaaaacaagaagctcaagattctcattgaacgt
atccatcgtgatgtggctagcaaaactcccatctttcatcagaagcagatggaattagag
agcgcattggatgaaatgcatgatatgaaggaacgattggactatgcccgtagggaagtt
atggatattcgtgccgataatcaggatttggaggttaagaatcagcagatggagagggaa
tgtcaggcgttgcgtagggagaatgtggatttggctactcaggtgcaaagattgttacaa
cgtggatcgggaggtgggaatgctgctgggtttgggggagatgatgttgtcacgtttgac
tcggttcagactctccagcaacagaatcagaacttgcttcgtgatcatcataccatgaca
gataagattcagacgttggagaatcatatcactaacaaccctgagaagattgagttggat
cagctcaaggaagaagtagtgacattgcgtgaagagcgagagaagcaatccaagcttgtg
gctggtatcgttcatcaacgtgatttgtaccgtgcattggttgccaagaatgatgccccc
ttgattgaaagtggggcgggtgagcatcaacttgccattgcagatgcgagggcggagcag
cttccaatgattgaagctaagaaccgcgagcttgtagaagaagtagccaagttacgtgca
gatgtatcgtgttccaagcacgaagtggaggcgttggagggacggttggcgcgtttcgat
gctcatgccgacgaactgacaacctcgaatgagcgtcttcgcggagagctaacagccgca
aacgccaccgtggctcgcatgacgattgacgtctcacattacactggaaagtgtgaacga
ttcgaagcgtcgttggaagccgtcaagggtgagagggattctgagtctcgtggaaggaac
caattggaggagttgaataataagttgcagactcatcttgaggctgctaggtcggaattg
gccaggaagcagcagcagtttgagactgcttcctcaaaaatgaggcttcttgaagtgcaa
ctccaaaatgccaaatccgccgaagaacgaatcacttcggaggcgaacgaattgcgttct
gaaattgcacgacagggtgctttgcttgcatctgtgcagcgtattgaggctagtttggct
gccaagtccgagggagaacgtgatcatcttgcggcagaagtacaacgccttagtgaatca
atctcgggtgatgccacaaagcattcggcgacggtgcaaaagctggagggcaaggtagct
gacttggagctcagtgtcaaagatctcagttcgcagaaagaggcgtctgcggcgagtgct
gccaaagccaatttggaagtgtcaaagttgaagctaaagattgaggagatcaacttgaag
agcaagactgtcgaaaaggagcttgtcgctgcaaaacgcaagttgggaggtgtcaccatt
gacaatagcgtagaggaagcattggaggcaaaggtggccacgttgactgctgagctggag
actaccaagttggatctggaaaaggcgaaggaaagagtagtcaacttccaaagcattgca
aaggccagcgaagagcaggtcgtcgagttgactgctgcgtccacgaaatacaaggatgag
acggctgctaacttggagaggctcaagaaggcggagcaatctcagcgagaggcagtcacg
gaattgacgaacgatctcatggctcatcgtggtgaaaaggataaggctgtgaatgatttg
aaggcaaagattgactctctcaccgttcaactcacaggtgctaaggaggacgcttcaaag
gccaccgcaaggatggagtctatgttgtcggaaatgaaatgttaccagctcaatgccacg
aatgctcagaacaattacgaacgggaacttgctctacatgctgaagcacgaacttctctt
cgtgatgctcgtgcactagctgaatcagagcaacgtctccgtgtgacagctgaagccact
cttgattccactaaagcagagtttgacttggagaagagtgcatgggaagcagaaaagctc
agactcgagggatctgtgcaagaagcgaagtcaaggcttgatgatttgcgctctcagaac
aacatcctctatgatcaaatgacgtctctgtcaaccacggttgataagtttcagtcggat
aaggcatctgaacttgttgatgatggatctggaggtgactctgatgacaaactactttct
aatcttcgcgaacttcttcgcttcaagcaatccgaatgcgccatgctagaagctgacctc
gcatctgccaagcgagcaacggaacgtgagagaactgccgcagatctggccaaacgaagt
cttgaggcggcgaggtctgagttgaaggtttcccgtgagagtgctcaaggtggagactcg
ggagcatcagagaaggaactggatgagctccgtagcaaactcaagacggccgaagaacag
ctcgttttgatccgtgaaagtaacaccatgcttcgcaaggagtctcagaaagttaccaag
aagttggccgaggttcagactgagttggatagtgccaagacttctgcctctccacaaaaa
gataagttggctgctatggaagttgaaaaagcatcgttgttggccgagaaggatagtcta
tcacgtgaagtagatgcgtggaagaatcgtgttcacagtcttgtgtccaagttcaatcag
attgaccccgaagaacatgctcaggcacttgctagagttgaacagatgaaggaggaatgc
aaatctatgaaggggctcaaggacaaggccgaaaaggattcatcctctgccaagggattg
gtggcacagttgaacaaggaaatatcgagtcaaaaggcctcgatggacgccttcaggact
gcacttgagaagactaaggccgaaaaggagaaattgtccaaggcagctcaattaaacgat
tcaaagaaggtggccgaggcccaggctgcgttgaaggcttcgaaggccgagttggatgca
tcgaatgctcgactgtcgaacttcaaagacatgttgcgaaagatgcaggtcggccttaag
agtgcaaaggacgcagaagataaagcaaaatcgactgaaaaagctcttcaaaaggaaatc
accgagttgaagcataagcttgctgtcgctgaatcgtctcagacgaagggtggcgaatct
gcaactgaggcaaaggtcgaagatcaaactccagtggttgagcagccaaagactgtcgct
acggagactccagctgttccagaaaagaaaattgaaactacgaccaccaccacaacaaca
gcatccgatgtgattaagcccgacgaaacagcagatgccaccaaagctgctcctgtggtt
gatgcgacagaggcgaccccattggttgaggagaagccgagtgaagtggcggcttcctct
gaaatgaaagtagatgcttctgagaaggcaccggttgcggccactaaaaagaagggcaaa
aagcgcaaggctgcagtccctcaaaagaacgctgcacccagtgacagctcatcagctcct
cctcaaaagaagtctgccacccaggatgcggcggcgagtgccaaggcatcgggcgaaaag
acaggtgcctctgaaagcattaaaagcactacccacacgaagcaggctccggttcctcca
aagaagaagattgtattgaagaaaaaagctgcagccaaagaaactcctgcatccacacct
gccgctgtcacaaatatagcacctgctgccactgccaagacaactgcagcgtctacgaag
gaggaagaaatgaagttaaaaatgctattgttgaaaaaacgcaaagcagaggcagctcaa
cgactccaagtcgccaagaagaagaaggaaaccgaagccattgagactgcagccgctgtt
gaggaatctgaaaagatatccaaggagtctgcaccgtcgattacctcggcgtcggaggac
acgccaaaagaaactgagtcaaatgacaaacccgttgcgaaggctgtccctgctttgtcg
tcgccaaggcccctcccacccgtccccgaaaaagacgagccaaaggaggagatgagggag
ccgactactgctgccgttgatgacaaaaaggacactgctgccgttggttctagtaccagt
gttgctggcgctacgggagttggaggcattcctgcggctgttcctcccgcggctgagcct
gactgtccaaagccatcgttctttggcgaatcatctacaacggctgcaccaactgcaatc
tttggtattgctgctccttcaactaaatcaatctttgttggtggggctgtaaagtcatcg
aacgaagcaaagaaggcagaaagcccggatgctgaagcccagcctgctgccgcaaagggt
gcattcctaaacttgacgcctccgggaaaagcaaaggctgcacagtttgtatttggaaat
tcggccaatatcacgcttccggtgcctgctagtagtccattcggtgttttcagtggtatc
caaaagaccacgatgggttcaacgccattcgggtcaggatttggtggtattgcaactccc
tttggtggacagaaagcgagtgccgccggtgtggagcaaaagaaggaagattctggagct
gcgactgaaactacacaacctgatgagaaaaaggagaagggagaggttgcagaggaggaa
tgtgcaacaaagaaggatcctgtggcaaagaaagcttaa
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