Thalassiosira pseudonana: THAPSDRAFT_25688
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Entry
THAPSDRAFT_25688 CDS
T01078
Name
(RefSeq) predicted protein
KO
K11293
protein HIRA/HIR1
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_25688
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
THAPSDRAFT_25688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
WD40_Prp19
Hira
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
7443674
NCBI-ProteinID:
XP_002294982
JGI:
25688
UniProt:
B8CF99
LinkDB
All DBs
Position
22:complement(131519..135471)
Genome browser
AA seq
1305 aa
AA seq
DB search
MVLVEIPLWVTHGNPNAKKGDRALPGIRQPTAADTNGTTDERQSNPPAAAALQLLQSTRH
GTNRSPVYSCDVHPDGTRFATAAGDGTVRVWSLGCLFAGKSGHAKNGGTTRRGASSRFTE
SGNYVSSNSDDYDTASSLEEGRTTSAATGGGSAQQASMQQQQLPYVAPSQPPEGVNDLSG
LVRKKKAKGSTSAPPLASKLPATSLVAAASTTAAAVARPAATSSSNPVTSNTTTNNISNK
PTPSTQKHQQPKLLSTISSHEGSVLSLRFSPSGLYLATAGDDSYVNIYMRSKSPSLVKGN
LVGVDSQGNRAIGNEGGGNGVGGGGEDVEHWNRIAVCRGHHLDVVGLAWAPDDSHLVSCS
LDSANPVIVWRLYDVLVGGENGSEGGGGSVGGLTGMNSSVHIHNLHPFKILGKNVHTSTV
KGVAFDPAGKYIATSGDDPAICIWRAFDDWGLEARIDSNSGVFRSKKRKRKVPQDPSGGM
GEDDDEEEDDPGELASLSLFRRISFAPDGSHVCGTNASLRGKNIAAMISREGWAASAPQS
EANGGGTPRKKDNPPGAANLVGHKQPVVSSRHCPIFFQVPSKGNSDSEESEDDPDLEPEY
ATLVALGDKRGFVTVWSTKMSRPLFKMQCSESRCTVTDISWGFNRYKGEDSLIMIVSLLD
GYVVAINFNIPEEVGGGGILSAEKQRQIFRLKYGIEDFVGTYGVTPGKGRRGKRLVDDVG
PMLIENALQLTMEMENDEDEVDGEEEESVESESQTGGKSPKGCNAAETVTTKGGKKRIRA
VLINENGDATNNAAGDDAGKKKRKKAKDTQNPLQSALDAAAQASTVAQQGAGAKAARREK
TSGGGAKSSANQPLSGAAPSRPASLPPPSQLGPVVRIPCVANKIHSVDLVSKSSSATLPS
SILDETTTKIVADCVNSPMAALGGTPATSWSCATLTISRGGVRQWKDIIAKTSCTSLAAN
HETIAVGTSDGCLYLYGTSATLGFESGKAYRAFPPFVLGSPVAEINFSTTNDSKAADGSN
TTSQMIVVTSDGNFYVYSLLSLGPKLEYKGSIAPAMQHMYLSCVPMNYRGPAQPRLARIQ
ITESNQLMLILLISTMVSVKTLQGFVYNRSMQLWMRVSDSNSFLVSDFYSSLTGLKPHKG
GEGILAKVDKFVRSGASSTESAKQMYNKLVETEKQTSKAIVTRSHCEDRLACAIALGSAS
EFRAWLSLYSRCLSISGDAGALRFLVDVLLGNPNDIDDMGEAESTRPTRSCWWFHSVGSQ
CLGLDNKEVIRKRILPEMSKNRQLQRLTNEISMELDSLSLHFKYP
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggtattagtcgagatccctctctgggtaacccacggcaaccccaacgccaaaaaggga
gaccgcgctcttcccggcattcgccaacccaccgccgccgacaccaacggcacgaccgac
gaacgacaatccaacccgccagccgccgccgccctccaactgctccagtcgacgcgacac
ggaacgaaccgctctcccgtgtactcgtgcgatgtccaccccgatggaacgaggtttgcg
actgctgcgggagatggaactgtgagggtttggagcctgggttgtttgtttgctggcaag
agtggccatgcgaagaatggcgggacgacgagacgaggggcgtccagtcgatttacagag
agtgggaattatgtcagtagcaacagtgacgattatgacactgcttcttcgttggaggag
gggaggaccacgtctgctgctactggcggtgggtctgctcaacaagcgtctatgcaacaa
cagcaactgccatatgtggctccgtcacaacctccagagggcgtcaatgatttgagtggt
ttggtacgaaagaagaaggccaagggctcaacttctgctcctcctttggcgtcaaagttg
cctgcgacgtctctggttgccgcagcttcaactacagcagcagcggtagcacgtcctgcc
gccacatcaagcagcaatcccgtcacctccaacaccactacaaacaacatttccaacaaa
ccaacaccatcaactcaaaaacatcaacaaccgaaacttttatccacaatctcctcccac
gaaggctccgtcctctcccttcgcttctccccctccggtctctacctcgctacagccggt
gacgattcctacgtcaacatttacatgaggtccaaatctccctctctcgttaaaggcaat
ttggtgggagtggactctcagggaaatcgcgctattggaaatgaaggtggagggaatggc
gttggtggaggaggggaggatgtagaacattggaataggatcgccgtctgtagaggacat
catttggatgtggtggggttggcttgggctccggatgatagtcatttggttagttgtagt
ttggatagtgcgaatcctgtgattgtatggagattgtatgatgtgttggtgggtggggag
aatgggagtgagggtggtggtggaagtgtgggaggattgactggcatgaattcttcagtg
catattcacaatctgcatccgttcaagatactcgggaagaacgtacacacttctacagtc
aagggagttgcgtttgaccctgctgggaagtacattgccacatcaggcgatgatcctgcc
atttgcatctggagggcattcgacgattggggattagaagcacggattgattccaacagc
ggtgtgtttcgttccaagaagcgtaaacgcaaggttccacaggatccatccggtggcatg
ggtgaggacgacgacgaggaggaagatgatcccggtgaacttgcgagtttgtcgctgttt
cgtcgtatttcgtttgctcccgatggatcacacgtgtgtggtaccaatgcttcgttgagg
gggaagaatattgctgccatgattagtcgagagggatgggcggcttcggcacctcaatcg
gaagctaatggggggggcactccgagaaagaaggacaatccacctggtgcagcgaatttg
gtggggcacaaacaaccagtggtgagcagtcggcattgtcccatcttctttcaggttcct
tcgaaagggaactcagacagcgaagagagtgaggatgatccagatctagagccagagtat
gcaacgctggtggcactcggtgataaacgtggctttgtgacggtatggtctacgaagatg
agtcgtccattgttcaagatgcaatgcagtgagagtcgctgtacggtcacggatatctcg
tggggattcaatcgctacaagggcgaggattcattgatcatgattgtgtctcttttggat
ggatatgtggtggcgatcaacttcaacattccggaggaagtgggaggaggaggtattctt
tcagctgaaaagcaacgtcaaatctttagactgaagtatggtattgaggattttgtgggg
acgtacggtgtcactcctggaaagggtcgacgtggaaagcgtctcgtggatgatgtaggg
ccaatgctgattgagaatgcacttcagttgacgatggaaatggagaacgacgaggatgaa
gttgatggtgaggaggaggagtctgtggaatctgagtcacaaaccggaggaaagtcgcca
aagggatgcaatgctgctgaaactgtcaccaccaaaggagggaagaagcgtattcgtgca
gtcctcattaacgagaatggcgatgcaaccaacaatgcagctggcgatgatgcagggaag
aagaagcgaaaaaaagcgaaagacactcaaaatcctcttcagagtgcgttggatgctgct
gcgcaggcatctactgttgcgcaacagggtgccggagcaaaggctgcgaggagggaaaag
actagtggaggtggtgctaaatcgagtgctaatcaaccactgtcaggagccgctccaagt
cgtccagcttcacttcctcctccgagtcagttgggacctgttgtgagaatcccttgcgtt
gcaaacaagattcatagtgttgacttggtctcaaagtcttcatctgcaacgttgccatct
tctattttggacgaaacgacaaccaaaatcgttgccgactgtgtcaactctccgatggca
gcgctgggagggacgcctgccacctcttggtcatgtgccacactcacaatcagccgtgga
ggggtacgtcagtggaaggatatcattgccaaaacatcatgcacttctcttgctgccaat
catgagacgattgccgtaggtacatccgatgggtgcttgtatctctacggtacatctgcg
acgctgggatttgagagtggtaaggcgtatcgtgcctttcctccgttcgtcttgggaagt
ccagttgcggaaatcaatttcagcacaacgaacgacagcaaagcagcagatggctcgaat
actacttcccagatgattgtggtgacatccgatgggaacttttacgtgtatagtctactt
tctcttggtccaaagttggaatacaaaggatctattgcaccagcgatgcagcacatgtac
ctttcttgtgttccgatgaactaccgaggacctgcacaacccaggctcgctcgaattcag
attactgagtcaaaccaactcatgctcattcttttgatttcaaccatggtctctgtgaag
actcttcagggtttcgtctacaatcgcagcatgcagttgtggatgcgagtttcagattct
aatagcttcctcgtgtcggacttttactcctctctcactggattgaagccacacaaagga
ggagagggcatccttgccaaagtggacaaattcgtacgatccggagcttcgtctacggaa
tcagccaagcagatgtacaacaaacttgtcgagaccgaaaagcagacgtctaaggcaatc
gtcacgaggtctcattgtgaagacaggttagcctgtgctattgccctcggatcggcatct
gaattccgagcatggctatcgttgtattcacgttgcctctccatttctggcgatgctggt
gctctgaggttcttggtggacgtcttactcggcaatcccaacgatattgatgacatggga
gaagcagaatcaactcgtccaactaggtcttgttggtggtttcattctgtcggaagccaa
tgccttggtttggacaacaaggaagtgattcgcaaaagaatcttgccagaaatgagtaag
aatcgtcaactccaaaggttgaccaacgagatatcaatggagctagatagtctctcattg
cattttaagtatccatag
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