Thalassiosira pseudonana: THAPSDRAFT_25815
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Entry
THAPSDRAFT_25815 CDS
T01078
Name
(RefSeq) predicted protein
KO
K13210
far upstream element-binding protein
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_25815
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_25815
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
THAPSDRAFT_25815
Spliceosome [BR:
tps03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
THAPSDRAFT_25815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-GeneID:
7448266
NCBI-ProteinID:
XP_002295123
JGI:
25815
UniProt:
B8CG50
LinkDB
All DBs
Position
23:49838..53145
Genome browser
AA seq
728 aa
AA seq
DB search
MDPAHQDAVARARAIAARLAGTGATVDTTGGSGGGSSSGGGYGSASASTYGHGGGGDVNA
QAQAALDAAFSGGGGGQSAYAPTGDSTNKRGVQEALASLIPGLGTLPDAKRAKTDSYYGS
ADSGKTVKKLWIPSDRNPGYNYVGLLIGPGGSKQRELVAASGGDVKISIRGKGSHSKPGS
EAVPGMPEEPLHVLLEGSATCVANAEKLVRELLEDSEVADKEKARQLSSLGGEDGDTATK
GGASSYTPKPVAQILGQMSGNTALSAYGPNGGGGEEQVEEKIGVPNGMVGFIIGRGGESI
TSMQRRSGCRVQIQKEHEMAPGTTQRVITLTAPNAESIAQCRAIIESMIVERMQQTGATT
AALASSSTALGGGSSASSQMALLQKALNEGQKHITVQVPDADVGLIIGKQGAQIRTIQDT
SGANVQIPQVADAGNPSVRTVNITCPTLEGAEFAKQMIEEVLASKAQVGGGGMGGGGGGG
GDVTIQVNCPDKDVGMIIGRGGCVIKQMQTTTRCRIQIPPTAPPGSMYRVISVSGTAAGC
QQVQQMIETIVAEQSSQAVMSGVAYSNGAQPQQQNYYGQQAAYGQQAYGQQAAYGQQAAT
GQKDYSAEWAAYYAAQAAAQGGAAATTTAEPAAAPAAATATSETPAHDAYYEVFWQYAAY
YGEEAARKHYGGWSPPVGTPNPNANAGASATSSAPAPAAPAPAAQVGEAKDSSVRKVSNL
PALTKGTN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggatccagcacatcaagacgcagtagcaagagcacgagccatcgccgctcgtctagca
ggaacgggcgccacagttgataccaccggtggcagcggcggcggttcctcgagcggtggc
ggctacggatcggcgtctgcctccacgtacggccacggtggcggtggggatgtgaatgct
caggctcaggctgcgttggatgctgccttttcgggtggcggtggcggtcagtccgcctac
gcacccaccggcgacagcaccaacaaacgcggagtccaagaagcactggcctccctcatc
cccggcctcggcaccctccccgacgccaaacgcgccaaaaccgattcctactacggctct
gccgactccggcaaaacagtcaagaaactgtggatcccctccgatcgcaacccgggctac
aactacgttggactcctcatcggccccggaggcagcaaacagcgggaactggtggccgcc
agcggaggcgatgtcaaaatatccatccggggaaagggaagccacagcaagcccggcagc
gaggcagtgccaggaatgcccgaggagccgcttcatgtgctgttggagggaagtgccacg
tgtgtggcgaatgcagagaagttggtgagagagctgttggaggatagtgaggtggcggac
aaggagaaggcgagacagcttagttctttggggggggaggatggcgacactgctaccaaa
ggaggagcatcgagctatactccaaaaccggtggctcaaattctaggacaaatgtcagga
aatacggcgttgtcggcgtatggaccgaacgggggcgggggagaggaacaggtggaagaa
aagattggtgtgcctaatggtatggttgggtttattattgggaggggaggggagagtatt
actagtatgcagaggaggagcgggtgtagggtgcagattcaaaaggaacacgaaatggca
ccaggaacaacccaacgcgtcataaccctcaccgcacccaacgccgaatccatcgctcaa
tgccgtgccatcatcgaatcgatgatagtagaacgcatgcaacaaaccggagcaaccacc
gccgcattagcatcgtcatccaccgccctcggaggaggatccagcgcctcttctcaaatg
gccctccttcaaaaagcactcaacgaaggtcaaaaacacatcaccgtccaagtccccgat
gcagacgtcggtctcatcattggcaaacagggggctcagattcgtaccattcaggatacg
agtggagcgaatgttcaaatcccgcaggtggcggatgcggggaatccgagtgtgaggact
gttaatattacttgtcctactttggagggggcggagtttgcgaagcaaatgattgaggag
gttttggcgagtaaggctcaggtgggtggtggggggatggggggaggaggtggtggaggg
ggtgatgttactattcaggttaattgccccgataaggacgttggaatgatcattggacga
ggaggatgtgtcatcaagcaaatgcaaactacaacccgttgtcgcattcagattccaccc
actgctccaccaggaagcatgtatcgtgtgatttcggtgtcgggtactgccgcggggtgt
cagcaggtgcagcaaatgattgaaacgattgtggcagaacagtcatcgcaggctgtcatg
tcgggagtggcatattccaacggtgcacaaccacagcagcagaattactatggacaacag
gcagcatatggacagcaagcctacggacaacaggcggcgtatggacaacaggcagcgaca
ggacagaaggattattctgctgagtgggcagcctactatgcagctcaggcggctgctcag
ggaggagcggcggcaactaccacagcagaaccggctgctgcccccgctgcggcaacagct
acatcagaaacgcctgctcatgatgcctactatgaagtattttggcagtatgcggcttac
tatggcgaagaagctgctcgcaaacattacggcggatggtctcctcctgtcggaactccc
aatccgaatgccaatgctggtgcatctgctacgagtagtgctcctgctcccgcagcccct
gctcctgctgcacaagttggggaagcaaaggactcgagtgttcgtaaggtctctaatttg
cctgcattgaccaagggtactaattga
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