Thalassiosira pseudonana: THAPSDRAFT_25879
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Entry
THAPSDRAFT_25879 CDS
T01078
Name
(RefSeq) predicted protein
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03440
Homologous recombination
tps03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
THAPSDRAFT_25879
03460 Fanconi anemia pathway
THAPSDRAFT_25879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_25879
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_25879
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
THAPSDRAFT_25879
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Topoisomerases
THAPSDRAFT_25879
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
THAPSDRAFT_25879
FA (Fanconi anemia) pathway
THAPSDRAFT_25879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_TOP3B
Motif
Other DBs
NCBI-GeneID:
7442693
NCBI-ProteinID:
XP_002295196
JGI:
25879
UniProt:
B8CGH9
LinkDB
All DBs
Position
23:423944..430141
Genome browser
AA seq
1417 aa
AA seq
DB search
MSQSNSKRPHDYYNPSDEFNSPLNDADFNAAAADFGDFKASKDMRRKNSHETMATFMSVQ
TSFTKKGRGWECRGCSMLNDMECNQCEVCGGMKHDLSSQQQQQQQQQLIRLCSMGSGKSS
DTKSDKSKQSDKSKQLKQSSQQKDNSKQVSGSSQRSAPDPPPLDKKSRGGGRKKKMSCGR
DAPGDAPEVVISSGGGIAGDRAAVKGKQTRNDAAGAREGTKKKGGEKGTSTTPSTAATTR
PPITLGAAGLPGEGTSAVIAQLLGLTEELNLHDTTAAGNASNTHSSHSGSNKNNSKGRKK
TTFATEVQDIGNATKLKAKIQGDREKAVRHKAARRSGEKRESKEKQPQQQSELVISNTGS
IRGDILVDTAPTQSTLTLGEASDLCASAQPWQPSRNTEVEASVSQLNSNESRHKQHGGSE
DQAKKEKRPKKDHGKKKGKQFKAEGVADGGDEGDSAEQSSPKQKDGSAGDDVDKRSNKAK
KSRKQQQSGGEANAPSSVNLTLQAIQQSKQSKGKGGRNTNEDSKSPSQHQEKQQSREHVR
KDEQGSTKATAKKDGNNGSRVKDAAAVTKGTKAKRSIANDDTPKEATKQRDKSHPKKADK
SHDKSASNKASSSLAATSSHAPQIPPSQPQTTNNLNYGAGRPIVVVHIAEKPSIAQAVAQ
GLSDGGDTKSGGKGLPTYEFTNPPFNKAPQASKVTHRVTSVAGHVFNVDFPSEYQSWDSV
DPAELFHAPVVRKPCKGSVVRHLQDVAKGVDFIVLWMDCDRRDTSKGDTGISIVQCCLMD
HTPTLGFCVQRHVEMETFKPEPYWLMDLGVMNAGTMCRAVWDSGRSFNRNKVDDLVAKCK
NSSSAVFAKVDAVVTKNRHQGRPVPMNTVAMLKACSKVLGIGPHAALSIAERLYLSGYLS
YPRTESTKYPKSFDIVGTLKEQSYDNRWGQYVGELLKSGPNVGKGGADMGDHLTISTSSI
SLHCQLVTPGFLAIVLYKQYGDEADEGNGGDDEEEKALPPFAEGDQFGLFFAGSAKSGKV
CVSDKWATLDVKEKMTTPPTYLTESELISKMEKHGIGTDASISTHIENIMKRNYVELISG
RKLKPSRLGLVLAQGYHLIDSSLVLPQIRADIELECNKIAKGLADRDDVVKKAIEMFSAK
FLYFAENVNKMDILFGSSFAQLQDVGKPFTRCGFTRRYLQFITGPPPLPIGGELKQWTGR
HCPVVGCNFELCLYSVGAPARTFPLCPNCFNNPRPEWGPVPGENAVAKPGEEDDEAKERS
IRRLAGKNICRECPHGDKHPLIEDMTVSPDPDSGGVLILDPHLGPKLTFLMVSKWRLVST
REPTIVHLPKSIDKVTILDKKDEVLGCHMMSIEFKDGESPIDGKKKYVSCFAIDEVLQGL
VRVHHGDERLKASGGRGGRGRGGRGGRGGRGGRGSRR
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgagccaatcaaactccaaacgcccacacgattattacaatccgagcgatgaattcaac
tctcctctcaacgatgcggatttcaacgccgccgctgctgacttcggtgacttcaaagct
agtaaagacatgcgacgaaagaacagccacgaaacaatggcaacgttcatgtctgttcag
actagttttacgaagaaggggaggggatgggagtgccgtggttgcagcatgctgaacgat
atggaatgcaatcaatgcgaagtctgcggaggaatgaagcatgatctgtcctctcaacag
caacaacagcaacagcaacaactgatcagactctgcagcatgggctcaggcaaatcatcc
gataccaaatccgacaaatccaagcaatcagacaagtccaaacagttgaagcaatcatcg
caacaaaaagacaactcaaagcaagtaagcggcagcagtcaacgatcggctccggatcca
cctccactggacaagaagagtagaggagggggtagaaagaaaaagatgagctgtgggcgg
gatgctccgggggatgctcctgaggttgtgatttctagtggtggtggtattgcgggtgat
agagctgctgtaaagggaaagcagacaaggaatgatgcagcaggagctcgtgagggaacc
aagaagaagggtggagagaagggtacttctacaacaccatcaacggcagcaacaacacga
ccaccaatcacgctcggagcagcgggtctaccgggagaaggaaccagtgccgtcattgcc
caactactcggtctcacggaagagctcaatctccacgataccaccgctgcaggaaatgca
tccaatactcactcgagtcactccggatccaataaaaacaacagcaaaggaaggaaaaag
acgacgtttgcaaccgaagtccaagatattggaaatgctaccaaacttaaggcaaagatt
cagggggatagagagaaggcagttcggcataaggctgctcgtaggagtggggagaaacgt
gagagtaaggagaagcaaccgcagcagcagagtgagctcgtgattagcaatacgggaagt
attcgtggagatattttggtagacacggcaccaacacaatcaactttaacacttggggaa
gcctctgatttgtgtgcgtcggctcaaccatggcagccttcgaggaatacagaggtggaa
gcatcggttagtcaattgaatagcaacgagagtcgtcacaagcaacatggaggaagtgaa
gatcaggcaaagaaggagaaaagaccaaagaaagatcacggaaagaagaagggaaaacag
ttcaaagcggagggggttgctgatggtggagacgaaggagatagtgcggagcaatcgtca
cccaaacaaaaagacggctctgccggcgacgatgttgacaagcgaagtaacaaagctaaa
aagtcaaggaagcaacaacagagtggtggggaagcgaacgctccgtcttcggtgaattta
acgctgcaagcgattcaacagtcaaagcagtccaaaggaaaagggggtagaaacaccaat
gaagattccaagtcaccctctcagcatcaagagaagcaacaatctcgtgaacacgtgagg
aaagacgagcagggaagcacaaaagccacagctaagaaagatggcaataatggatccaga
gttaaggatgctgcagccgtgacgaagggaacgaaggcgaaacgttccatagcaaatgat
gacactcccaaagaagctaccaaacaacgagataaatcacacccaaagaaggcagacaaa
tctcacgacaaatcagcatcaaacaaggcatcgtcttcacttgcagcgacgtcgagtcat
gctccacagattccgccgagtcagcctcaaacgacgaataacttgaactacggggctgga
cgacctattgttgttgttcacattgcggaaaagccatcgattgctcaggccgttgcacaa
gggctgagtgatggaggcgacaccaagtctggagggaaaggtttgccaacttacgagttc
acaaatccacccttcaacaaagcacctcaggcgtccaaagtgacgcatcgtgtgacttca
gttgctggacacgtctttaacgttgactttccatctgaatatcaatcatgggatagtgtt
gatcctgcagagttgtttcatgctccagttgtgagaaagccatgcaaggggagcgtcgtt
cggcacttgcaggatgtcgcaaagggagtcgactttatcgttctttggatggactgtgat
agacgcgatacttccaagggcgatacggggatctcgatagtgcagtgttgtcttatggac
catacacctactcttggtttttgtgttcaaagacacgtcgagatggaaacattcaaacct
gagccgtattggctcatggatctaggagtaatgaatgctggaaccatgtgtagagctgtt
tgggactctggcagatccttcaaccgaaacaaagtggatgatttagtcgcgaaatgtaag
aactcctcatctgctgtcttcgcgaaagttgatgccgttgtgacgaagaacaggcatcaa
ggacgaccggtgccgatgaacacggtggctatgttgaaggcttgcagtaaagttcttggt
ataggccctcatgctgctcttagcatcgctgagcgactttatctgagcggctatttatcg
tatcctaggacagagtcgacaaagtatcccaaatcattcgacattgttggaactttaaaa
gagcaatcatacgacaacagatggggtcagtacgttggtgagctgttgaaatcgggccct
aacgttggcaagggaggtgcggacatgggtgatcatctgacgatatcaacctcatcaata
tcgcttcattgtcagctcgttactcctggattcttggcgattgttctttacaaacagtat
ggggatgaagctgatgaaggcaacggtggcgatgacgaagaagagaaagctctacctcca
ttcgcagagggtgatcaatttggactcttcttcgctggatctgccaaatccggtaaagtg
tgtgtatccgacaagtgggctacgttggatgtcaaagaaaagatgaccactccaccgacc
tacctcacggagtcagaactgataagcaagatggaaaagcatggtattggaacagatgcg
tcgatctctactcacattgagaacataatgaagcggaactatgtggaattgatttctgga
cgaaagctcaagccttcgagactaggattagtgcttgctcaaggctaccacttgattgac
agtagtttagtgctacctcaaatccgtgctgacattgagttagaatgcaacaagattgcg
aagggattggcagacagggatgacgtcgtgaagaaagctattgaaatgttctcggctaag
tttctctactttgctgagaacgtgaacaagatggatatcctcttcggatcgtcatttgct
caactccaagatgtcgggaaacctttcacacgatgtggattcactcgtcgataccttcag
ttcatcactggcccacctcctctaccaattggcggagagttgaagcaatggactggtcga
cattgtccggtagttggctgcaactttgagctctgcttgtattcggttggtgctcctgct
agaacctttccactatgtccaaactgcttcaacaacccacgccctgagtggggacctgtt
cctggagagaatgctgttgcaaagccaggcgaggaagacgacgaagcgaaggagaggagc
attagacggcttgccggcaagaacatatgcagagagtgtcctcacggtgataagcacccg
ttgattgaggatatgacagtctcgcccgatccagatagtggaggcgtcttgattctcgat
cctcatcttggacctaagctaacgtttcttatggtctccaagtggcgtcttgtttcaact
cgcgagccgacgattgtgcatctaccaaaaagcatagacaaggtgactatactcgataag
aaggatgaagttctaggctgccacatgatgtctattgagttcaaagatggcgaatctccg
attgacggaaagaagaagtacgtttcatgttttgcaattgacgaggtattgcaaggattg
gtacgagtgcatcatggagatgaacgactgaaggcatcaggaggaagagggggacgtggt
agaggcggcagaggaggtcgtggaggcagaggagggagagggagcaggcgatga
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integrated database retrieval system
