Thalassiosira pseudonana: THAPSDRAFT_261635
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Entry
THAPSDRAFT_261635 CDS
T01078
Symbol
pcna
Name
(RefSeq) pcna-like protein
KO
K04802
proliferating cell nuclear antigen
Organism
tps
Thalassiosira pseudonana
Pathway
tps03030
DNA replication
tps03410
Base excision repair
tps03420
Nucleotide excision repair
tps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THAPSDRAFT_261635 (pcna)
03410 Base excision repair
THAPSDRAFT_261635 (pcna)
03420 Nucleotide excision repair
THAPSDRAFT_261635 (pcna)
03430 Mismatch repair
THAPSDRAFT_261635 (pcna)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_261635 (pcna)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_261635 (pcna)
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
THAPSDRAFT_261635 (pcna)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
THAPSDRAFT_261635 (pcna)
MMR (mismatch excision repair)
Other MMR factors
THAPSDRAFT_261635 (pcna)
TLS (translesion DNA synthesis) factors
Other TLS factors
THAPSDRAFT_261635 (pcna)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCNA_C
PCNA_N
Rad1
Hus1
Rad9
Motif
Other DBs
NCBI-GeneID:
7452799
NCBI-ProteinID:
XP_002288154
JGI:
261635
UniProt:
B8BWU2
LinkDB
All DBs
Position
3:133281..134163
Genome browser
AA seq
261 aa
AA seq
DB search
MFEARLTQGKVFKQLIEALKDLVQEANIDCTDDEISIQAMDNSHVSLVAVSLRSGGFDHF
RCDRPISLGFNAANMGKILKCAGNDDVITLRAEDEGDSLALVFESPGQDRIADFELKLMD
IDNEQLGIPDTEYKCTIQMPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNV
LVRQNSAAEKDEEKVMIEMDEPVELTFALRYLNFFTKATSLGPTVILSMSPEVPVVVEYP
IGETGHIKYYLAPKIDEDEED
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaagcacgcctcacccaaggaaaagtcttcaaacagctaatcgaagccctgaag
gacctagtccaagaagccaacatagactgcaccgacgatgaaatctccatccaagcaatg
gacaactcccacgtgtccctcgtggccgtgtccctccgctcgggaggattcgatcacttt
cgatgcgatcgtcccatttcgttggggttcaatgctgcgaatatgggcaagattctgaag
tgcgcggggaatgatgatgtgatcacgctgagggcggaggacgagggggattcgttggcg
ttggtgtttgagagtcctggacaggataggattgctgattttgaactcaaactcatggac
attgacaacgaacaactcggcatccccgacaccgaatacaaatgcaccatccaaatgccc
tccgccgaattccaacgcatcatccgcgacctccaagtcctcggagacacctgcaccatc
tcctgcaccaaagagggagtcaaattctccgtttcgggcgatctcgggtcggggaacgtt
ctcgttcgtcagaatagtgctgcggagaaggatgaggagaaggttatgattgagatggat
gagccggtggagttgacgtttgcgctgaggtacctcaacttttttaccaaggcgactagt
ttgggacctacggttattttgagtatgagtccggaggtgcctgttgtggtggagtatcct
attggggagacggggcatattaagtattatttggctccaaagatcgatgaggatgaagag
gattaa
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