Thalassiosira pseudonana: THAPSDRAFT_261829
Help
Entry
THAPSDRAFT_261829 CDS
T01078
Symbol
DHC1_1
Name
(RefSeq) probable atp-dependent DNA helicase Q5
KO
K10899
ATP-dependent DNA helicase Q1 [EC:
5.6.2.4
]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_261829 (DHC1_1)
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THAPSDRAFT_261829 (DHC1_1)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
THAPSDRAFT_261829 (DHC1_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
7451694
NCBI-ProteinID:
XP_002288866
JGI:
261829
UniProt:
B8BY24
LinkDB
All DBs
Position
3:complement(<1191369..>1193214)
Genome browser
AA seq
515 aa
AA seq
DB search
SSKYPWQDRMMHHLRNTFHITNFRDHQHDIINSTLSGHDVFVVMRTGGGKSLTYQLPAVL
EAESDKRKVTVVISPLISLIRDQEEQMNEMLPGSALSFTSGLGSAEHNRRWGLVRDRNEG
VALIFVTPEKVGKSGRFKGEMEKLNEQGRLGRFVIDECHCACQWGHDFRPDYTKLGIFKH
HFPSVPVLAVTATASDRVRDDCIQILRLGKNYRFFRSTANRPNLTYSVKTKPDGKDAIVN
DMVDFIKTNHSNQAGIIYTFSRKEADNVADQLCDKGIIARAYHSDVADARKDNIHRSWMR
NETQVVVATIAFGLGINKPDVRFVLHHSISKSLEAYYQESGRAGRDGQPADCVLYYSPKD
VPKMLGMIHGEAGEPTFWHMVRYGQAHGDDSLCRLAILNILGEADTSQAGMERLERLADQ
CATTKRRNVGSHCQTVTQVVNTLNMLGEDCTLIQLVAKCKCFLKDNPPAKELNKEECERI
IVSMIVEEVLSPKIVYTAYNTNCYIELGRKAHAML
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
agctcgaagtatccatggcaagacagaatgatgcatcacctacgcaataccttccacatc
accaactttcgcgaccatcaacacgacattatcaactccactctctcggggcacgatgta
ttcgtcgtcatgcgtactggcggtggcaagagtctcacataccaactcccggcagtgctc
gaagctgaatctgacaaacgcaaggtgaccgtggtaatttctccattgatcagtctcatt
cgtgatcaggaagaacaaatgaatgaaatgcttcctgggagtgcattatcgttcacgtct
gggcttggtagtgcagaacataacagacgatggggattggtgcgagatagaaatgagggt
gtggctttgatatttgtcactcctgagaaggtgggaaagtctggcaggtttaagggagag
atggagaagttgaatgaacaggggaggttggggaggtttgtcattgacgagtgtcattgt
gcatgtcaatggggtcatgacttcagaccagattatacaaagttgggcatcttcaagcat
cactttccttctgtgccagtgttggctgtcacggcaactgcttctgatagagtacgagac
gactgcattcagatattgcgtttaggcaaaaactacagattcttcaggtccactgccaat
cgtcccaacttgacgtactcggtcaagaccaaaccagacgggaaagacgcgattgtcaat
gatatggttgactttatcaagacaaatcattcaaatcaagctgggattatctacacgttt
agcagaaaagaagctgacaacgtggccgatcagctctgtgacaagggcatcattgctcgt
gcctatcattcggacgtcgcagatgctcgcaaggataacattcaccgcagttggatgagg
aacgagactcaagtggttgtggcaactattgcatttggtctcggtatcaacaaaccggat
gttcggtttgtacttcaccatagcatctctaaatcccttgaggcctactaccaggagagt
ggtcgtgctggtcgagatggtcaaccagcggactgtgtgctttattactctccaaaagac
gtgccaaagatgctcgggatgatccacggtgaagcaggtgagcctaccttctggcatatg
gtacgctacggccaggctcacggtgacgactctttatgtagacttgcaatcttgaatatt
cttggtgaggctgatacgagccaagcagggatggagcgtcttgaacgactggcggatcag
tgtgctacgacgaagcgacgaaacgttggttctcactgtcagacagtgacgcaagtcgta
aatacactgaacatgcttggcgaggactgcactttgattcaactcgttgccaaatgtaag
tgcttcttgaaagacaatccaccagccaaagaactcaacaaagaagagtgtgaacgcata
attgtatcaatgattgttgaggaagtattgagtcccaagattgtctacacggcttacaat
acgaattgctacattgagttaggacgaaaggctcatgcaatgctt
DBGET
integrated database retrieval system
