KEGG   Thalassiosira pseudonana: THAPSDRAFT_262070
Entry
THAPSDRAFT_262070 CDS       T01078                                 
Name
(RefSeq) WD40-repeat protein
  KO
K17890  autophagy-related protein 16-1
Organism
tps  Thalassiosira pseudonana
Pathway
tps04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:tps00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    THAPSDRAFT_262070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tps04131]
    THAPSDRAFT_262070
   03029 Mitochondrial biogenesis [BR:tps03029]
    THAPSDRAFT_262070
Membrane trafficking [BR:tps04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    THAPSDRAFT_262070
 Others
  Specific organelles associated proteins
   Auto phagosome
    THAPSDRAFT_262070
Mitochondrial biogenesis [BR:tps03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    THAPSDRAFT_262070
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_EML Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_RIG_2nd WDR90_beta-prop_4th CFAP251_N ASA1 Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_EIPR1 CCDC39 Gon7 NBCH_WD40 ATG16 WDR54 PAC11 Beta-prop_SPT8 Beta-prop_RIG_1st Beta-prop_SCAP GatC PIMMS43_C
Other DBs
NCBI-GeneID: 7447445
NCBI-ProteinID: XP_002289194
JGI: 262070
UniProt: B8C175
LinkDB
Position
4:<437640..>439496
AA seq 541 aa
MEEIYSLIQKRNSIETLPFLPLHSANAYLQNLADTLQYRCESLERQYLEQQQFLVESQAQ
LIQLNANSDGGGGNSGSSKNESRLREKVAKLQDELNEKLTLEVKSTADALKASTELSSLR
QEVSSKDATISSMQMELNRCNEIVTYLTSELEESKSRTRLAENQFDGLKDAIRSLQDENI
EKTQLNERLLESTVSEKEKYVEQFNNMNDMVEKLQKEVAMLRSLTKMNKPWFGLPRRGQN
VVAESDRNDTSGVDMASKRQWGAVGAVLPSQPQYTIKAHKNDASFATASSDATVKVWDTG
NGQLQASFSGGGSQPMLGVDISGGIICGCGADKTCRVWRYDTKRMIHQLAGHSQKITCVR
LFPGEKSILTASADRSIRIWDISRHIYTQATTFRHSSTTNCTDVSGETNTVATGHLDGGV
RGVTSVQWNPKSSHEILTNGRDSTLKIVDARTNCAISTFHEVGFRTLSNYASSSFSPDGL
YVAAGGGDTGDIFVWNVAKNKLVKKLSGHVKGVLSLAWGRGGTNGQQVATIGKDGVLILW
A
NT seq 1626 nt   +upstreamnt  +downstreamnt
atggaggagatatacagcctaatacagaagcgtaactctattgagacgctgcctttccta
ccacttcactctgccaacgcttatctgcaaaacctagccgatacgcttcagtatcggtgt
gagtcgctggagcgtcaatatcttgagcaacagcagtttctagttgaatcacaagcacag
ctaattcagcttaacgccaatagtgatggtggtggtggaaactctgggagctcaaagaat
gaatctcgtctccgggagaaagtggccaagttgcaggacgagctaaatgaaaagctgact
ctcgaggtcaagtcaacagcagatgcacttaaggcatcaacggaactatcttctttgaga
caagaagtctcttcgaaggacgccacaatatctagtatgcaaatggagctaaacagatgc
aacgaaatcgtgacttatcttacttcagaattggaagaatcaaagtcaagaacgagattg
gcagaaaatcagtttgatggactcaaagatgccatccgttccttgcaagatgagaacatt
gaaaagacacagctaaacgagcgactattggagagcaccgtttctgagaaggaaaagtat
gtagagcaattcaacaatatgaatgatatggtggagaagcttcaaaaggaagttgccatg
ttacgatctttgacgaagatgaataagccatggtttggattgccacggagagggcagaat
gtagttgctgagagcgatcgaaacgatacatctggagtagatatggcctccaagaggcaa
tggggtgccgttggtgccgtgttgccgtcacagccgcagtacacaataaaggctcataag
aacgatgcttcgtttgcaacagcaagcagcgatgctacggtgaaagtgtgggatactggg
aatggacagttgcaagcttccttttctggtggaggaagtcaacctatgcttggagttgat
atcagtggtggtattatctgtggttgcggtgcagataagacatgtagagtatggagatat
gatacaaagagaatgattcatcaactagctgggcactctcaaaagatcacttgcgtgagg
ctctttcctggtgagaaaagcatactcacagcctctgctgatcgatccattcggatttgg
gacatatccagacacatctacacacaagcaacaacctttcgtcatagctcaacaaccaac
tgtacagatgtctcgggtgaaaccaacacagtagccactggtcatttagacggaggagta
cgaggagttacgtctgttcaatggaatcctaagagcagtcacgaaattctaaccaacgga
agagattcaacattgaagattgtggatgcaagaacaaactgtgcaatcagtacatttcac
gaggttggcttccgtacattgtccaactatgcatccagttccttctctcctgacgggttg
tacgttgcggcaggtggaggagacactggagacatttttgtatggaacgttgcaaagaac
aagcttgtaaagaaactaagcggacacgtcaagggagtactcagtttagcttggggtcga
ggaggtaccaatgggcaacaagttgcaacgattgggaaggatggtgtgttgatactgtgg
gcttga

DBGET integrated database retrieval system