KEGG   Thalassiosira pseudonana: THAPSDRAFT_262352
Entry
THAPSDRAFT_262352 CDS       T01078                                 
Name
(RefSeq) hypothetical protein
  KO
K14327  regulator of nonsense transcripts 2
Organism
tps  Thalassiosira pseudonana
Pathway
tps03013  Nucleocytoplasmic transport
tps03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    THAPSDRAFT_262352
   03015 mRNA surveillance pathway
    THAPSDRAFT_262352
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_262352
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     THAPSDRAFT_262352
   mRNA cycle factors
    P-body specific factors
     THAPSDRAFT_262352
SSDB
Motif
Pfam: MIF4G Upf2 Peptidase_C48
Other DBs
NCBI-GeneID: 7446707
NCBI-ProteinID: XP_002290022
JGI: 262352
UniProt: B8C0R2
LinkDB
Position
4:complement(2342290..2346519)
AA seq 1155 aa
SDLKKCTAFVKKIKSGTFPTPNELSSSSSPIKTLNLSRYVEEVAAAILESGGPNNKMKLA
DAPGVVMLCVEMHRRYSGFSAVLIPSLLAGVTGNNNGGSSGGDGETTCLPRRICLRLLTE
FILHGIITDVKPIAKIVAEAAGAPSSSETNSDKEYVVTDANAVVTFAKTGGMEILGVVPR
TATSVMESFKATTPYARAVPPPVITTLHAHCMGAYRTLSHSYLATHRRLIKLEKRCEQDR
LLQGNLSEAREKGLKDAQNLLDSLKKSVETLSDALDVDPPMLPTEEENATETTDGKGIEL
WTKNENDPTDEERDARLGPFDDEETRAFYCDVPDFLATKPPALLGVSPADLEKQKERNAR
QYGGLTGGEESELAAMEVEVVESLAHDDVMEEMEGADGEDVVMEEGGDAKGDENGKAMSD
TPHYKLMVLLEQELPEASRRETIDELADRFCVNHGSNKISRKRLYKTLFLVPRTRLDLLP
YYSRFAAIMDHVYSDSTLVTELEQQMHGQARFKKNQNIESRLRTARYLSELTKFRVAPPI
VILRGIKRCLEDFNGYNIDVACCMLESCGRYLFRMKHTHKKLSELMDTMMRIKKARNLDE
RHVAMITSAFFMVNPPPQSSRPTKEVPPLESYLRYLLMSRLEADDKSVSFVSKQIQRMPW
SDPSLDCGALVCKYMLKACRKGRYKATKAIASLAANLKRTKPEVPARFIDDVLEDIQWFM
EHPQFRDHQRTIVGARVFGELYCASAIPASTVFEVMHHILNFGHDIPDALRQASDNQETF
APLDPPSAVFRIKLVCTILDTVSSHIVSVSNKTKIELILASLQRYLFVKPTLPSDGKCIL
FISRLINDFISEARATTRLLAQAGLVESASTGDLLDDENMDGSVEMTDEEESLERGDSLE
GDSDDEESTVASEMETEVAPEECDSESDTDESEVDEEESDNEEEDGIDEAAAEAAYIRQL
QDEAFESELRKLTMDALERGKMSARTGAGGKVSSQMPAAPQFAKKPGVAEPKQESEVDPT
TNPFGGSEGMSFKLLKKGNKGKMEEKQFLVPTSTNLARRATKVDDEAVKEKEMIKARVLQ
YEAESADAGGNVYLDETKLQSIRNRPLTMEVLDKTFGKGNGAPYKVSSLRRPPVPGRGRG
GGRLFNPGRGGAGRG
NT seq 3468 nt   +upstreamnt  +downstreamnt
tccgatctcaaaaagtgcacagccttcgtcaaaaagattaaatccggcaccttccccacc
ccaaacgaactgtcctcctcctcctctcccatcaaaacactcaacctctcacgatacgtg
gaagaagttgccgctgccatactcgaaagcggtggtccgaataataagatgaaactggcg
gatgcacccggtgtggtcatgttgtgtgtggagatgcataggaggtatagtggttttagt
gcggtgttgattccttcgttgttggcgggtgttactggaaacaacaatggtggaagtagc
ggtggtgatggagaaacgacatgtctcccgcgtaggatatgccttcgtctgctcacagag
tttattctgcatggtatcatcacggatgtcaagccgattgcaaagatcgttgccgaggca
gcgggggctccttcctcttccgagacgaacagcgataaagagtatgtggttacggatgcc
aatgctgtagtcacatttgccaaaacgggaggcatggagatattgggagtggtgccacgc
acggcaacttcggtgatggaatctttcaaagcaacaactccgtatgcacgtgctgtgcca
cctcccgttatcaccactcttcacgctcactgcatgggtgcctatcgtacactctctcac
tcctacctcgccacgcatcgtagactcatcaaacttgagaaacgatgtgagcaagatcgt
ttacttcagggcaatctgtcagaggcgagagagaagggattgaaggacgcacagaacttg
ttggactcgttgaaaaagtcagtggagacattgtcagatgccttggatgtggatcctccc
atgttgcctacggaagaggagaatgccacagaaacaaccgatggaaaggggattgagttg
tggacaaagaatgagaatgatcccacggacgaagaacgagatgctcgtcttggaccgttt
gacgatgaagaaacacgtgctttctactgtgatgttcccgactttttggcaaccaaacca
ccggccttattgggtgtcagccctgctgatttggagaagcagaaggagaggaatgcaagg
caatatggtggattgactggaggagaagagtcggaattggcggcgatggaggtggaagtt
gttgagagtttggctcatgatgatgttatggaggagatggagggtgctgatggggaggat
gttgttatggaggagggtggtgatgctaaaggagatgagaatggtaaggccatgtctgac
actcctcactacaagttgatggttctcctcgagcaagaactacctgaagctagcaggaga
gaaactattgacgagctagctgatcggttctgcgtcaaccatggaagcaacaagatctca
cgcaaacggttgtacaagacactctttctcgtgccacgtactcggttggatttgctgcct
tattactctcggtttgctgcaatcatggaccacgtctactcagactcaacgcttgtcact
gagttggaacaacaaatgcacggacaagccagattcaagaagaaccaaaacatcgagagt
cggttgcgtactgcaagatatctcagtgagttgaccaaattccgtgtggctccacccatt
gtgattcttcgcggtatcaaacgatgtttggaagatttcaatggatacaacatcgatgtg
gcttgctgtatgcttgaatcatgtggacgttatttgttccgtatgaaacacactcacaaa
aagctatctgaattgatggataccatgatgagaataaaaaaggccaggaatcttgacgag
cgtcacgtagcgatgatcacctctgcattcttcatggttaatccgccaccacagtccagc
cgtccaacaaaggaagtgcctccactagaatcataccttcgttatcttctcatgtcacgt
ctagaggcagatgacaagtccgtttccttcgtgagtaagcagattcagcgtatgccgtgg
agtgatccaagcctcgactgtggtgcacttgtttgcaaatacatgctcaaagcatgccgc
aaaggaaggtacaaagcgaccaaagctattgcctctcttgctgccaatctcaagcgaaca
aaacctgaggtacctgctcgcttcatcgacgatgtgttggaggacattcagtggttcatg
gagcacccacagtttcgtgaccatcaacgaacgattgttggtgctagagtgtttggcgaa
ctttattgcgcatcagcgattccagcttcaaccgtatttgaggtgatgcatcacatattg
aattttggacacgatattcctgacgcgttgaggcaggccagcgacaatcaagagactttt
gctcctcttgatcctccgtcagccgtctttcgtatcaaactcgtgtgtactattcttgac
acagtcagttctcatatcgtgtcagtcagcaacaaaacaaagattgaactcattctcgct
tcgctacagaggtatctctttgtcaagccgactcttccgagcgatggtaagtgcattcta
ttcatatccaggttgattaatgattttatctccgaggctagagcaaccacaagattatta
gctcaggctggactcgtggaaagtgcatctacgggggatcttctcgacgatgaaaacatg
gatggtagtgtggaaatgacggacgaggaagagtctttggaacgaggcgatagtttggaa
ggggactctgacgatgaggagtcaactgttgcatcggagatggagacagaggtcgctcct
gaggagtgtgacagcgaatcagacacagacgagagtgaggtcgatgaagaggaatcggat
aacgaagaggaagacggcattgacgaggctgctgccgaagcagcatacattaggcagctc
caagacgaagcgtttgagagtgaattgcgtaagctcaccatggatgctcttgaaagaggt
aaaatgtctgccagaactggcgctggaggaaaagtgtcgagccaaatgccagcggcacca
caatttgcaaaaaagccgggtgttgctgaaccaaaacaagagagtgaagtagatccaaca
accaatccatttggtggttcggaaggcatgtcattcaaactgctaaagaagggcaataaa
ggaaaaatggaggagaaacagttcctagttccaactagtaccaatctagctcgtcgtgca
acgaaagtggacgatgaagcagtgaaggaaaaggaaatgatcaaggcgagagtattgcaa
tacgaggcagagagtgcggatgctggaggaaacgtatatctcgacgagacaaagttacaa
tctatccgtaaccgcccattgacgatggaggtactcgataaaacatttggaaagggcaac
ggagcaccatacaaagtctcttctttgaggagacctcctgtaccaggtcggggccgagga
ggaggacgtctatttaatccgggaagaggaggagccgggcgtggttag

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