Thalassiosira pseudonana: THAPSDRAFT_262359
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Entry
THAPSDRAFT_262359 CDS
T01078
Name
(RefSeq) guanyl nucleotide exchange factor
KO
K18443
golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
THAPSDRAFT_262359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_262359
Membrane trafficking [BR:
tps04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
THAPSDRAFT_262359
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
7452273
NCBI-ProteinID:
XP_002289580
JGI:
262359
UniProt:
B8C0S3
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All DBs
Position
4:2381312..2384740
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AA seq
835 aa
AA seq
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PALVSIMARLAALADPLIHEDDTCILALSLINIALETMSDVDSLAVNYPRLLSILQNDLC
RNLLRLSTASDLTILGLSLRVIFNLFNGIKDHLKVQLEVFLTSVHLRILSSSDTSFANHF
KFQLALESLLEFCREPMLMQDLYINYDCDINCTNLFESECPFLFEDIIGRPRLNILNRLA
LEGVIAVIDSIARRCRASSNLPQTPLSHREDDADADMNYLSRTKHQESLVLRERKIKKRR
LAKAAAMFNECSRDKEWLVEAERLGVITSPATADSVAHFLYHTPKLDKVKIGSYISKGPP
ERYPFIADVLKAFAGLFDFRGMSFSDALRVFLSRFRLPGEAQCIDRLMEAFAARLRTDSI
FPFKSADACFILAFSTIMLNTDLHNPNMDDAKRMTIDQFVRNNRGINDGEDLPTDFLKSL
YYEINNEEIQVKQDTQDGLGKDGDFDGLLANAADVATPFYTSTNSAHNNYVSVHDRDMFI
SISSAAIEAVSTVYVHSWDDALVAKALDGLKNAANICVCFGLHQQFNEILQLLLSWGGDY
EALVESSYEASNNVAGSAAHRGLLSLDCALTLCKNHLSSINEALPALLDVVFALRDVDAL
PERLGDLDDFADSHGEPLPPSSFANSCREVVTKYKDSAASSSEQSSPLQKVLQKVSKKAS
LDQIILKTNDVVLAKRVLSAMLMAMYPDEDADIFTADPLFEHNASFVLELAARLLISNRA
HSSEMLPIFLSRFEALLSPQTNQSTGETEIIGLKHPYLVERIVVTILRACIHLYDIPETC
LRQHLNRSLELISKLPVAYTREISDRLSCGAAIILRGCFFLFDTAQEWDTIKHLL
NT seq
2507 nt
NT seq
+upstream
nt +downstream
nt
ccagcactcgtgtcaatcatggctcgtctcgctgcccttgcagatcctcttatccacgaa
gatgacacgtgtatcctggctctcagtctaatcaacattgcactagaaacaatgagtgac
gttgattcacttgcagtcaactacccacggttgctgagcattctacagaacgacctctgt
cgcaacttgttgaggttgagtactgcttcggacttgacaatattagggctatcgctccgt
gttatctttaacttgttcaatgggatcaaagaccatttgaaggtgcaactggaggtgttc
ttgacaagtgttcatttaagaatactttcttcttcggacacgtcgttcgctaaccacttc
aaatttcagttggcattggaatctctgctagagttctgtagagagccgatgctgatgcag
gacttgtacataaactacgattgcgatatcaattgcaccaacctgtttgagagtgagtgt
ccattcctcttcgaagacattatcgggaggcctcgtttaaacatccttaaccgtctggct
ttggaaggggtcattgccgttattgatagtatcgcaagaaggtgccgtgcatcaagcaac
ttaccacagacaccgctctctcatcgtgaggacgatgctgatgccgacatgaattatctt
tccagaacaaagcaccaagaatcgctagttctccgcgagagaaaaatcaaaaaaagacgt
cttgcaaaggcagctgctatgttcaatgaatgctcacgtgataaagaatggcttgtcgaa
gctgaacggcttggagtaatcacatctcccgccactgctgattctgttgcacactttctc
taccacactcccaagctggacaaagtaaagatcggctcatacatctcaaaaggtcctcct
gaaaggtatccgttcatcgctgatgttctcaaggcatttgctggactctttgactttaga
ggcatgtccttttcagacgctctacgtgtattcttatcacgatttcgtttgcctggggag
gcacaatgtattgatcggttgatggaggcgtttgctgcgagacttcgcacagattctata
ttcccgttcaagagtgctgacgcgtgtttcatcttggccttctcgacaatcatgcttaat
acggatttacacaacccgaacatggacgatgcaaagaggatgacaattgaccagttcgta
cgaaacaacagagggattaatgatggagaagatctgcctactgatttcttgaagtctctt
tattacgagattaataatgaagaaattcaagtgaaacaagatacccaagatgggcttggt
aaagacggggactttgatgggttgttggcaaatgcagcagatgtcgctactcccttttac
acctcgacaaattcagcacacaacaactacgtgagtgtccacgatagggatatgtttatt
tctatctcctctgctgccattgaggcagtgtcaacggtgtacgttcacagctgggacgat
gctctggtcgcaaaggctctcgatggattgaagaatgctgccaacatctgcgtctgcttc
ggattacatcaacaattcaatgagattctacaattgctcttatcttggggaggagattac
gaagcgttagtcgaatcttcgtacgaagcaagtaataacgttgctgggagtgctgctcat
agagggctattgagtcttgactgtgctcttacgctatgcaagaatcatctctcttcaata
aacgaggcactgccggctctattggatgtagtgttcgctcttcgagatgttgatgctctt
cctgagcgtcttggcgatctcgacgatttcgcagatagccatggagagcctttgccacca
tcttcatttgcaaacagctgtcgggaagtagtgaccaaatacaaagattcagcagcgtca
tcttccgaacaatcctctcctctgcagaaggtattgcaaaaagtgagcaaaaaggcctcg
cttgatcaaatcatactgaagacgaacgatgtcgttttggccaagcgagtactttctgcg
atgctgatggccatgtatccagacgaagatgcagacatttttactgccgatccgttgttt
gagcacaacgcctcatttgtgcttgagcttgcagctcggttgctcatctccaatagggct
cattcttcagagatgcttccaatctttctgtctcggtttgaagccttgctctcgccacaa
acaaatcaatcaactggagaaacagaaatcatcggtctcaagcatccataccttgtggag
agaatcgttgtgactattttgcgcgcatgcatccacttgtacgacattccagagacatgc
ctccgtcagcatttaaatcgatcgttggaactcatctcaaagcttcccgtagcgtacacc
cgagagattagtgatcggcttagctgtggggcagcaatcattctccgtggctgctttttc
ctttttgatactgctcaggagtgggacacgatcaaacaccttcttga
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