KEGG   Thalassiosira pseudonana: THAPSDRAFT_262521
Entry
THAPSDRAFT_262521 CDS       T01078                                 
Name
(RefSeq) WD40-repeat protein
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_262521
Spliceosome [BR:tps03041]
 Complex B
  Other components
   Complex B specific factors
    THAPSDRAFT_262521
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML LisH_TPL ANAPC4_WD40 NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Cytochrom_D1 Beta-prop_WDR75_1st LisH_PAC1 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_IFT122_1st LisH Beta-prop_IFT140_1st Beta-prop_VPS8 PQQ Beta-prop_NUP159_NUP214 LisH_WDR26 Beta-prop_HPS5 zf_topless
Other DBs
NCBI-GeneID: 7450062
NCBI-ProteinID: XP_002290699
JGI: 262521
UniProt: B8C2V5
LinkDB
Position
5:complement(1161732..1163918)
AA seq 540 aa
MSESSTTDIPSADILRLILAHLTESGLHQTCAALREESGLGMAGLFATSKGRLVSSAEEG
RWGEALEILEGLDVERHRQSFLEDYRLHHDGKSSLDDVERRITSLSSLRTSSASNGASTA
LLLPVNYYGPSNQTQQKRRSQIAKLLKRLVPEVPMQRLASLLQQSVRWQCHTGVFPTIQR
LFQNNDDEDGKISSAIDNCAVERIPSRSTQTIRLGKNSYIESAIFLPDGRGLVTGSSDGF
IEIWGEPISEKGGTNINYENLRTSDLSYQRNDDLMMHDTAVLAMDVSNDGTLLGTTSSDG
TVCVWKIMDGKLLRKLERAHGGSGGGDKGAAVTCIQFSPDGSKILTGGHDSTAREFGLLA
SRMLKEFRGHRSYVNCCSYAASGNALVVVTASADGNVRVWDGKTAEPMREITPPIPTSNA
VSIHTVMHLHSPPQTMIVVPRTDRAYLMSYTGAVLRVFTRDDVQGTDFLAASVSPSNRWL
FVAADDGKCVAFDVNTGKECSGRSEKASDITGIIHHPFRGLIGGYSNSKGQKRGILTLWK
NT seq 1623 nt   +upstreamnt  +downstreamnt
atgagcgaatcctccaccaccgacattccatcagcagacatcctccgcctcatcctcgcc
cacctcaccgaatctgggttgcatcaaacatgcgccgctcttcgcgaggagtccggcctc
ggaatggctggattattcgccacctccaaaggacgacttgtgtcctctgcggaggagggg
cgatggggggaagcgttggagattttggaggggttggatgtggaacggcatagacagtct
tttttggaggattataggttacatcatgatgggaagagcagcttggacgatgtggagcga
cgcatcacttccttgtcgtctctgcgaacatcatccgcttccaatggggcgagtacggct
cttctccttcccgtaaactattacggtccatctaaccagacgcaacaaaaacgaaggagt
cagattgccaagttgctgaaacggctggtaccagaggttcctatgcagaggttggcatca
ttacttcagcagagtgtacgttggcagtgtcacacgggagtgtttcccactatacaaaga
ctgtttcaaaacaacgatgatgaggatggaaagatatcatcggctatcgacaactgtgcc
gttgaacgcattccatcacgatccacacagacgatacgtttgggcaaaaatagttatatt
gaatcagcaattttcctgcctgatgggagaggattggtaactggatcgagtgatggcttc
attgagatttggggggagcctatcagtgagaagggcgggaccaacattaactatgaaaat
ctgcggacgtctgatttatcgtatcaacgcaatgatgacttgatgatgcatgatacggca
gtactggcaatggatgtatccaacgacggaacattgttgggtacaacttcctccgatggc
acagtttgcgtgtggaagattatggatggcaagctactacgaaagcttgagagggctcac
ggtggcagcgggggtggcgacaagggtgctgccgttacctgcattcagttctcgccggac
ggatcaaagattttgaccggaggacatgattccacagctcgtgaatttggcttgttggca
agtcggatgctcaaggaatttagaggacaccgatcgtacgtcaactgctgcagttacgcg
gcaagtggcaatgctctcgtcgttgtaacagcaagtgccgatggaaatgtgcgagtatgg
gatggcaagacggcagagccaatgagagagatcactccacccattcctacatctaatgct
gtaagtattcatacggtgatgcacttgcattcaccacctcagacaatgattgttgttccg
cggacagacagggcgtatctcatgtcgtatactggcgcagtgctgagagtgtttacacga
gatgacgtgcaaggtactgatttcctagcagcatcagtgagtccaagcaaccggtggctg
tttgtagctgcagatgacggaaagtgtgttgcatttgatgtgaatactggcaaagagtgc
agtgggaggagcgagaaggcatctgacatcaccggaatcattcatcatccttttcgcggt
ttgattggaggatacagcaatagcaaggggcagaagcgaggcatcttgactttgtggaag
tag

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