Thalassiosira pseudonana: THAPSDRAFT_262574
Help
Entry
THAPSDRAFT_262574 CDS
T01078
Symbol
ssrp1
Name
(RefSeq) structure specific recognition protein 1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tps03000
]
THAPSDRAFT_262574 (ssrp1)
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_262574 (ssrp1)
Transcription factors [BR:
tps03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
THAPSDRAFT_262574 (ssrp1)
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
THAPSDRAFT_262574 (ssrp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
HMG_box
HMG_box_2
Rttp106-like_middle
SSrecog
HMG_WDHD1
POB3_N
Motif
Other DBs
NCBI-GeneID:
7448150
NCBI-ProteinID:
XP_002290767
JGI:
262574
UniProt:
B8C388
LinkDB
All DBs
Position
5:complement(1498836..1501607)
Genome browser
AA seq
765 aa
AA seq
DB search
MGNNDDIETKRTLPQNAIAGALWTIFGKSGHLRVLTKTLEGSKTKLPAALRFDGFPPSDF
DRLTEAFQTMYGITLKRHSMSSAGASWGNTDIANKHLFEPRDGEEMLSLDLGEVSQCVLP
GNNRNEIEMQFLESDTVEAGTDQLVAIRFYVPPDQDADPTDKDAPTSAELLQSRITEVAS
VKKTSGAIIAEFDENKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPKQ
DDMHMAFVIALDKPIRQGQQRYNMLVMQCTKEQSELNINLDDATIEKEYNGEIQAHMNGS
FSNLVAKTFKVITKKKVFIPGKFANANQQACVKCALRANEGHLYPLEKQFIFIHKPAVLI
RFDEIESVEFQRYAGGQGSTRNFDLSVSLINTPGDNLAVKEYTFSGIDKTNYASLYSFLS
QKKIRIKNIEGIGSEEPARSAPMYNEMDEGGEEMGESSEDEDYDQAKASESEESSSDEDD
DDDLGSMSDDSDLAEHRKKAAKKSKDKSSKKEKPSKKSADKGSNKRKEPEKKKKQKDPNA
PKRGLSAFNFFTSAKRGDIKAANPDASFAELAKLVGAEFKGLSASEKAKYEELAANDKKR
YEKEMESYVPPEEDSDDESDGEKTTKKPSAKKAKKDPNAPKRPMNPYMLFANSVRAQVRE
ENPDMSMGDVSKEIGIRYKAIDEKEKAKWQSKADAAKEVYKKEMAQYEKTKPQTEKSPSK
PKTKAKDTVVKKITKPEPKSESEDSDDDAAADSSDDSGSYASESD
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacaacgacgacattgaaacaaaacgcactctcccccaaaacgctattgcgggg
gctctctggacaatctttggaaaatcgggtcatctccgtgtccttaccaaaacgttggag
gggagtaagacgaaactccccgcagcattgcgttttgatggattccctccctcagacttt
gatagattgacggaggcatttcagaccatgtatggtattactttgaagcgccattcgatg
agttctgccggggcttcttgggggaatacggatattgcgaacaaacacttgttcgagccg
agggatggggaggaaatgctgagtctggatcttggagaggtttctcagtgtgtgttgcct
ggaaacaataggaatgagattgagatgcagttccttgagtctgatacggtggaggctggg
acggatcagttggtagcaattcgcttctacgttcctcctgatcaagatgcggatcctacg
gataaggatgctccaacttcagctgagttgttgcagtcacgtatcacggaggttgcgagt
gtgaagaagacttctggagctattattgctgagtttgacgagaacaagggaacgttcctt
actcctcgtggtcgctactctattgagttgtacgattcctttcttcgcttgcgcggggca
aagtatgattacaagatcaagtacgatgatatttcgaggttgttccttcttccaaagcag
gacgatatgcatatggcttttgtgattgcgttggacaagcctattcgtcagggtcaacag
aggtacaatatgcttgtgatgcagtgtacgaaggagcagtctgaactgaatatcaatctt
gacgatgctaccattgaaaaagaatacaacggcgaaattcaggcgcacatgaacggttcc
ttctccaacctcgttgccaagacgttcaaagttatcaccaaaaagaaggtattcatcccg
gggaagtttgccaatgctaaccagcaggcttgcgttaagtgtgctcttcgtgccaatgag
ggacatctttaccctcttgagaagcagttcatcttcattcacaaacctgcagtgcttatc
cgtttcgatgaaattgaatcggtggagtttcaacgttatgctggaggacagggatcgaca
cgtaactttgacctttctgtgtcattgattaacactcctggggacaatctagctgtcaaa
gagtacaccttctctggtatcgacaaaacaaactatgcctcgttgtacagttttctttcg
cagaagaagattcgtatcaaaaacattgaaggtattgggagcgaggagcccgctcgaagt
gctcccatgtataatgaaatggacgaaggtggcgaagaaatgggcgaaagctcggaggat
gaggattatgatcaggcaaaggcctctgaatcagaggagtctagcagcgacgaggacgac
gacgacgatctcggatccatgtctgatgattcagatttggcagagcacaggaagaaggca
gccaaaaagtccaaggataagtcatcgaagaaggagaaaccatccaagaagagtgctgat
aagggatcgaacaaaaggaaggaacccgaaaagaagaagaaacagaaggatcccaatgcc
cccaaacgaggtctctctgctttcaacttctttacgagtgcaaagcgtggcgatatcaaa
gcagctaacccagacgcgtcctttgcagaacttgcaaagctcgtcggggcagagttcaag
ggtctcagtgcaagcgagaaagctaaatatgaagagcttgcggcaaatgataagaagcgt
tacgagaaggagatggaaagctacgtacctcctgaggaggattctgatgacgaatcggac
ggcgagaagaccacaaagaagccctctgcaaagaaggcgaagaaagatcccaacgcaccc
aagcgtcccatgaatccgtacatgttgtttgcaaactctgtaagagcacaggttagggag
gagaatcctgacatgagtatgggtgatgtgagcaaagagattggaattcgttacaaggca
atcgacgagaaggagaaggccaagtggcaatccaaggccgatgcagcgaaagaagtttac
aaaaaagagatggctcagtacgagaaaaccaaacctcagacagagaagtcgccatccaaa
ccaaagacgaaggcgaaggatacggttgtgaagaagatcacgaagcccgagccaaagtct
gaatcggaggattctgatgatgatgccgctgctgattcatctgacgactcgggatcttac
gctagtgagtcggattag
DBGET
integrated database retrieval system
