Thalassiosira pseudonana: THAPSDRAFT_262795
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Entry
THAPSDRAFT_262795 CDS
T01078
Name
(RefSeq) nuclease, Fen1 like, Rad27 family
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_262795
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
THAPSDRAFT_262795
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XPG_I
Chromo_2
XPG_N
Motif
Other DBs
NCBI-GeneID:
7448588
NCBI-ProteinID:
XP_002291005
JGI:
262795
UniProt:
B8C5G4
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Position
6:<613771..>616035
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AA seq
754 aa
AA seq
DB search
MTVSSLWTVLDEAGCGRPVGIEDFDTSNTSNINSRPTILAVDTSIWICEGISSTALSSFH
SDPALYLVYQRTTKLLKLGLGLVFVLEGKRRVRSTYQSSEHHELKQRRSGSQFWSATERC
ESLLRLLGVPVVRAEAEGEALCALLNAKGVCDGVISNDGDCFLFGAKTLYTKFTMENLES
RQVMCYDATALMATVDSDGLNGKTITLSREDLVAFALLTGSDMFGAGLSHVGHKKAVQFL
HTCSSLNQRPNQRTCLEELLGWGDVAAESASKLNDNQCDDDGPSTITERCCSKCLHSGSK
SQHVKNGCTICGTKPGEGCIVVTSKEKFLRSLREKALKMNPPFAPRGIVNEYFSPNNNMV
PMTLDSDNMKRYIVTPDAASLFNSPMIIKGNTLVASQEYIRETFPHLLARLELWTDQRNK
YVSARRKYKPVPEKIEKEFVKQSEPCYEVVWSIDVDPNLGDTATFTFSTIEPQSLVVNSK
YSGLCKLFHQETRRQNQQLDREKQFIGQKKVHKRRPNEQREKHFSRGNNRAGVSRTRERR
FGSTIVRPQQNTLKLKSSNDVSMLMEFLPVCDRVGKHVDENEAVDSDRVEPLPSDKEDDE
DDSFDKLEASIDAGLELKRSNVNFDFYEDVKMDKGYLEASSSINNYQGLELALLDPGSAA
DLGIALDGGFGDEEYRETSAMSNNEYQCYAEYQQSSLPQYFDEKTPQRHNSRACASGRPS
ANAMPLLTPNNRERIFCDLGVTIEVTPIVSGRWR
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctcatcgttgtggacggtcctcgatgaagctgggtgtggcaggccagttgga
attgaggacttcgacacatcaaacacgagcaacatcaacagtcgtcccacgatccttgct
gtcgacacatccatttggatctgtgaagggatttcgtcaaccgcactctcttctttccac
tctgatccagctctttacctcgtgtatcaacgaaccacgaaacttctcaagcttggcctg
ggtcttgtgtttgtgctggaagggaagcgacgtgtacgatccacatatcaatcgtccgag
catcacgagttgaagcagcgacgatctggctctcagttttggagtgctactgaacgatgt
gaatctttgctacgactcttgggtgtacccgtcgttcgggctgaggcagagggagaggcc
ctgtgtgcgttgttgaatgccaagggagtatgtgatggagtgatttccaatgatggagat
tgcttcttgtttggagcaaagacgctgtatacaaagttcactatggagaatctggagtcg
aggcaagtaatgtgttatgatgcaacagcattgatggctactgtggattctgatgggctg
aacggcaagacgatcaccctcagtcgtgaggatctcgtagcctttgcacttcttaccgga
agcgacatgtttggagctggattgtcacacgttggtcacaagaaggctgttcagtttcta
cacacttgctcaagtctgaatcaacgccccaatcaacgcacttgcctcgaagaattgctt
ggttggggagacgtagctgccgagtctgcatccaaattgaacgacaaccaatgcgatgac
gatggaccaagtacaataaccgagaggtgctgcagcaaatgtttgcattccgggagtaaa
tctcaacacgttaagaatggatgcacaatttgtggaactaaaccaggagagggatgcatt
gttgtgacttcaaaggaaaaattcttacgttcgttgcgagaaaaggcactgaagatgaat
cctccgtttgcacctcgcggtatcgtgaatgagtacttttcacctaacaacaatatggta
ccgatgacgttggactctgacaatatgaagcgatacatcgttactcctgatgcggcaagt
ctcttcaactcgccaatgataatcaaaggcaacactctcgttgcaagccaagagtacatt
cgggagacgtttcctcacctgcttgctcggcttgagttatggacagatcaacgcaacaaa
tacgtatctgctagacgaaagtacaagcctgtaccagaaaagattgagaaggagtttgtg
aagcagtctgagccttgctacgaagttgtttggtccatcgatgtcgatcccaacctcgga
gataccgcaacgttcaccttttctactattgaaccacaatcgcttgttgtaaactccaaa
tattcggggttgtgtaagttgtttcatcaggagacgcgtcgtcagaatcagcaacttgat
cgggagaagcaattcattgggcagaagaaggtacacaagagacgtcccaatgaacaacgc
gagaagcactttagcagaggaaacaacagagccggggtgagtaggactcgcgagagacgc
tttggctcgacaatcgtgcgaccgcaacaaaatacactcaagctaaagagcagcaatgat
gtttcaatgctcatggagtttcttcctgtctgcgatcgggttggaaagcatgttgatgaa
aatgaggcagttgactcagatagagtagaacctctaccgagtgataaggaggacgacgaa
gatgactcctttgacaaattggaagcttcaattgatgcaggtcttgagctgaaacgtagc
aatgtcaactttgatttctacgaggatgtgaaaatggacaagggatatcttgaggcttcg
tcatcgatcaacaattatcaaggtcttgagctcgcattattagacccaggatccgccgct
gatcttggcattgcattggatggtggctttggagacgaagagtatcgtgagacatcagca
atgtcaaacaatgagtatcaatgctatgccgagtatcagcaatcgtccttgcctcagtac
tttgacgagaagaccccgcaacgtcacaattctcgcgcatgtgcttcagggagaccatct
gcaaatgccatgccattactaacaccgaacaatcgcgaacgtatcttttgtgatcttgga
gttaccattgaggtgacgcccattgtttctggtcgatggcgttga
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