KEGG   Thalassiosira pseudonana: THAPSDRAFT_262891
Entry
THAPSDRAFT_262891 CDS       T01078                                 
Name
(RefSeq) hypothetical protein
  KO
K14297  nuclear pore complex protein Nup98-Nup96
Organism
tps  Thalassiosira pseudonana
Pathway
tps03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    THAPSDRAFT_262891
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPSDRAFT_262891
   03036 Chromosome and associated proteins [BR:tps03036]
    THAPSDRAFT_262891
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     THAPSDRAFT_262891
Chromosome and associated proteins [BR:tps03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    THAPSDRAFT_262891
SSDB
Motif
Pfam: Nucleoporin2 Nucleoporin_FG Nup98_GLEBS
Other DBs
NCBI-GeneID: 7445981
NCBI-ProteinID: XP_002291099
JGI: 262891
UniProt: B8C602
LinkDB
Position
6:1102920..1108075
AA seq 801 aa
MFGAPSTPFGAPAPSGFGQAPAFGAAPAAPSAFGQPSGFGAAPQPASTFGQATSGFGQQP
AASTGFGAAPSAFGQAPSAFGQPAASTGFGSPSPAPAFGMKPAQGLFGSAPSAFGQPALG
GQQQTGTAAVPYQETSKNDGSSSIILQAITAMPQYEQKSFEELRLEDYLAGNKGTQGQAP
VSTGFGGFGAAPQPAPAPTGLFGAPAAAPTSLFGSSTPAPVGNLFGSSSATPAPSTGFGG
FGAAPQPAPTSTGLFGGELTTAVVYTSAPTSLFGSTTPAPSGNLFGSAATPGERSPSTGF
GGFGAAPQPGKSQPIFQLLPCERLQFIAQLSCSMHEAPASTAPAAAPTSLFGNTPATGFG
GFGASPAAAPSFGQQPGKTLWSPTSLFGNPAPGKNEYAITVVAKDYSAPSSATIGGLFGN
AATPAPSSGLFGQPAAAPSFGSQPATNLATQQQAALQYATLLSNHTIGPSADALLAQQLA
AVEKQKKDMELMRAWRGNYEAGSKVVATSNYEQESGDNWTSAAPSSALISNYRAAPRSAA
KIRPRGYSPATKPSAVASMGRKNGGSPILSPNRFTRLLLTNGISNGNGDSSHLQSPDATS
ATAPKPVDSVSPQGKPSPAHDFYNQVVGSPDGTNVVASPVHTVSHSVPKLTKTGYNVYPP
ISELETMSEADLAAVADFKVERPGYGSVAWDGSVDVRGVDLDSVVVIETKNVSVYDDAEL
NGDKPRQGSKLNRPAVITMFGIYPKGGAESSVEAKEKLKKKIEKSTKKMGADLLSFDADG
GVWTFRVGHFSRYGLDDEDSD
NT seq 2405 nt   +upstreamnt  +downstreamnt
atgtttggagcaccttccaccccctttggcgccccggctccaagtggttttggacaggct
cctgcgtttggagctgcaccggccgctccctcggcgttcggtcagccttccggttttggt
gctgctcctcagcctgcgagtaccttcggtcaggctaccagtggttttggacagcagcct
gccgcttctactggctttggagctgcacctagtgcatttgggcaggcaccttcagctttt
ggtcaacctgctgcaagcacaggctttggaagtccttctccagccccggcgtttggtatg
aagcctgctcagggcttgtttggttccgcgcctagtgcattcggacaaccagcattggga
ggacagcaacaaactggaacagctgctgttccttaccaggaaactagcaaaaacgacgga
tcgtcatcaatcatcttacaagctattacagcaatgcctcagtacgagcaaaagtcgttt
gaagagctacgattggaagattacttggcagggaataaaggaacgcaaggtcaggcgcct
gtctcgactgggtttggcggatttggcgcggctcctcagccggctccagctccaactggt
ctctttggtgctccagcggcggctcctacttccttatttggcagcagtacgcctgctcca
gtggggaatctcttcggtagcagctctgcaactccagcgccatcgacgggatttggcgga
tttggtgcagctcctcagcctgctccaacttcaactggtctctttggtggtgagttaaca
acggcagtggtatatacgtctgctccgacgtctttatttggaagcacaacgcctgctcct
tcgggcaatctctttggcagcgctgcaactcccggtgagagatcaccatcaacgggattt
ggcggatttggtgcagctcctcagcctggtaagtcacagccaatttttcagttacttccg
tgtgagcgattgcaattcattgctcaactaagctgctcaatgcatgaagctccagcttca
actgctccagcagctgctccgacgtctttatttggcaacacaccagccactggatttgga
ggtttcggggcgagccccgctgctgccccctcgttcggccaacagcctggtaagacgttg
tggtcccctacttcgttgtttggaaaccctgcacctggtaagaatgagtatgcaattaca
gtagtcgcaaaggattattccgccccatctagcgcaactatcggcggactctttggaaat
gcagcgacgcctgctccaagttctggtctgtttgggcaaccagcagcggcaccatcgttc
ggatctcaacccgcaacaaacttggccacgcagcaacaagctgctcttcagtacgcaaca
ctactgtcaaatcacaccattgggccctcagcagatgcattgcttgcacaacaacttgcc
gctgtcgagaagcagaagaaggacatggagctcatgagagcttggcgcggcaattatgag
gcaggttcaaaggtcgtggctacgtccaattacgaacaggagtctggcgacaattggaca
tctgctgcaccatcctctgccttgatctctaactatcgtgctgccccaaggtccgcggca
aagattcgtcctcggggttattctccagcaacgaagccatctgctgtggcatcaatggga
cgcaagaatggaggatctccaattctttccccgaacagattcactcggttgctcttgacc
aatggcatttctaatggaaatggcgattcctctcatcttcagagtcctgacgcaaccagt
gctactgcacccaagccagttgactcggtttcgccacagggaaagccatctcctgctcac
gatttctacaatcaagtcgttgggtcgccagatggaaccaatgtcgtcgcatctccagtt
cacactgtatctcattctgttccaaagctaaccaaaacaggatacaatgtctaccctcca
ataagtgagcttgaaaccatgtctgaagcagaccttgcagctgtcgcagactttaaggtt
gaaagacctggatatggaagtgttgcgtgggatggctcagtggatgtacgtggcgtggac
ttggattctgttgttgtgatcgagacgaagaatgtatctgtctacgacgatgctgagttg
aatggtgataagcctcgccaaggatcaaagttgaaccggcctgcagtcatcactatgttt
ggtatctaccctaagggtggtgctgagtcttcggtggaagcaaaggagaagttaaagaaa
aagattgagaagtctacaaagaaaatgggtgctgatcttctctcgtttgatgccgatggt
ggagtgtggacgttccgtgtgggtcatttcagtcgttatggcttggatgacgaagactct
gatga

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