Thalassiosira pseudonana: THAPSDRAFT_262891
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Entry
THAPSDRAFT_262891 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_262891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_262891
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_262891
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
THAPSDRAFT_262891
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
THAPSDRAFT_262891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nucleoporin_FG
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
7445981
NCBI-ProteinID:
XP_002291099
JGI:
262891
UniProt:
B8C602
LinkDB
All DBs
Position
6:1102920..1108075
Genome browser
AA seq
801 aa
AA seq
DB search
MFGAPSTPFGAPAPSGFGQAPAFGAAPAAPSAFGQPSGFGAAPQPASTFGQATSGFGQQP
AASTGFGAAPSAFGQAPSAFGQPAASTGFGSPSPAPAFGMKPAQGLFGSAPSAFGQPALG
GQQQTGTAAVPYQETSKNDGSSSIILQAITAMPQYEQKSFEELRLEDYLAGNKGTQGQAP
VSTGFGGFGAAPQPAPAPTGLFGAPAAAPTSLFGSSTPAPVGNLFGSSSATPAPSTGFGG
FGAAPQPAPTSTGLFGGELTTAVVYTSAPTSLFGSTTPAPSGNLFGSAATPGERSPSTGF
GGFGAAPQPGKSQPIFQLLPCERLQFIAQLSCSMHEAPASTAPAAAPTSLFGNTPATGFG
GFGASPAAAPSFGQQPGKTLWSPTSLFGNPAPGKNEYAITVVAKDYSAPSSATIGGLFGN
AATPAPSSGLFGQPAAAPSFGSQPATNLATQQQAALQYATLLSNHTIGPSADALLAQQLA
AVEKQKKDMELMRAWRGNYEAGSKVVATSNYEQESGDNWTSAAPSSALISNYRAAPRSAA
KIRPRGYSPATKPSAVASMGRKNGGSPILSPNRFTRLLLTNGISNGNGDSSHLQSPDATS
ATAPKPVDSVSPQGKPSPAHDFYNQVVGSPDGTNVVASPVHTVSHSVPKLTKTGYNVYPP
ISELETMSEADLAAVADFKVERPGYGSVAWDGSVDVRGVDLDSVVVIETKNVSVYDDAEL
NGDKPRQGSKLNRPAVITMFGIYPKGGAESSVEAKEKLKKKIEKSTKKMGADLLSFDADG
GVWTFRVGHFSRYGLDDEDSD
NT seq
2405 nt
NT seq
+upstream
nt +downstream
nt
atgtttggagcaccttccaccccctttggcgccccggctccaagtggttttggacaggct
cctgcgtttggagctgcaccggccgctccctcggcgttcggtcagccttccggttttggt
gctgctcctcagcctgcgagtaccttcggtcaggctaccagtggttttggacagcagcct
gccgcttctactggctttggagctgcacctagtgcatttgggcaggcaccttcagctttt
ggtcaacctgctgcaagcacaggctttggaagtccttctccagccccggcgtttggtatg
aagcctgctcagggcttgtttggttccgcgcctagtgcattcggacaaccagcattggga
ggacagcaacaaactggaacagctgctgttccttaccaggaaactagcaaaaacgacgga
tcgtcatcaatcatcttacaagctattacagcaatgcctcagtacgagcaaaagtcgttt
gaagagctacgattggaagattacttggcagggaataaaggaacgcaaggtcaggcgcct
gtctcgactgggtttggcggatttggcgcggctcctcagccggctccagctccaactggt
ctctttggtgctccagcggcggctcctacttccttatttggcagcagtacgcctgctcca
gtggggaatctcttcggtagcagctctgcaactccagcgccatcgacgggatttggcgga
tttggtgcagctcctcagcctgctccaacttcaactggtctctttggtggtgagttaaca
acggcagtggtatatacgtctgctccgacgtctttatttggaagcacaacgcctgctcct
tcgggcaatctctttggcagcgctgcaactcccggtgagagatcaccatcaacgggattt
ggcggatttggtgcagctcctcagcctggtaagtcacagccaatttttcagttacttccg
tgtgagcgattgcaattcattgctcaactaagctgctcaatgcatgaagctccagcttca
actgctccagcagctgctccgacgtctttatttggcaacacaccagccactggatttgga
ggtttcggggcgagccccgctgctgccccctcgttcggccaacagcctggtaagacgttg
tggtcccctacttcgttgtttggaaaccctgcacctggtaagaatgagtatgcaattaca
gtagtcgcaaaggattattccgccccatctagcgcaactatcggcggactctttggaaat
gcagcgacgcctgctccaagttctggtctgtttgggcaaccagcagcggcaccatcgttc
ggatctcaacccgcaacaaacttggccacgcagcaacaagctgctcttcagtacgcaaca
ctactgtcaaatcacaccattgggccctcagcagatgcattgcttgcacaacaacttgcc
gctgtcgagaagcagaagaaggacatggagctcatgagagcttggcgcggcaattatgag
gcaggttcaaaggtcgtggctacgtccaattacgaacaggagtctggcgacaattggaca
tctgctgcaccatcctctgccttgatctctaactatcgtgctgccccaaggtccgcggca
aagattcgtcctcggggttattctccagcaacgaagccatctgctgtggcatcaatggga
cgcaagaatggaggatctccaattctttccccgaacagattcactcggttgctcttgacc
aatggcatttctaatggaaatggcgattcctctcatcttcagagtcctgacgcaaccagt
gctactgcacccaagccagttgactcggtttcgccacagggaaagccatctcctgctcac
gatttctacaatcaagtcgttgggtcgccagatggaaccaatgtcgtcgcatctccagtt
cacactgtatctcattctgttccaaagctaaccaaaacaggatacaatgtctaccctcca
ataagtgagcttgaaaccatgtctgaagcagaccttgcagctgtcgcagactttaaggtt
gaaagacctggatatggaagtgttgcgtgggatggctcagtggatgtacgtggcgtggac
ttggattctgttgttgtgatcgagacgaagaatgtatctgtctacgacgatgctgagttg
aatggtgataagcctcgccaaggatcaaagttgaaccggcctgcagtcatcactatgttt
ggtatctaccctaagggtggtgctgagtcttcggtggaagcaaaggagaagttaaagaaa
aagattgagaagtctacaaagaaaatgggtgctgatcttctctcgtttgatgccgatggt
ggagtgtggacgttccgtgtgggtcatttcagtcgttatggcttggatgacgaagactct
gatga
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