Thalassiosira pseudonana: THAPSDRAFT_263480
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Entry
THAPSDRAFT_263480 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K01965
propionyl-CoA carboxylase alpha chain [EC:
6.4.1.3
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00280
Valine, leucine and isoleucine degradation
tps00630
Glyoxylate and dicarboxylate metabolism
tps00640
Propanoate metabolism
tps01100
Metabolic pathways
tps01110
Biosynthesis of secondary metabolites
tps01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
THAPSDRAFT_263480
00640 Propanoate metabolism
THAPSDRAFT_263480
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
THAPSDRAFT_263480
Enzymes [BR:
tps01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.3 propionyl-CoA carboxylase
THAPSDRAFT_263480
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
Biotin_carb_N
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
ATP-grasp
ATP-grasp_5
PCC_BT
ATP-grasp_3
ATPgrasp_ST
Biotin_lipoyl_2
Motif
Other DBs
NCBI-GeneID:
7444988
NCBI-ProteinID:
XP_002292388
JGI:
263480
UniProt:
B8C7R3
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Position
9:complement(102957..105373)
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AA seq
683 aa
AA seq
DB search
FRKILIANRGEIAIRVIRTARKLNIKTVAIYSTADAKSLHVSMADEAVCIGPPASNMSYL
DIDKVCAAIEMTGSEGVHPGYGFLSENGLFAKRVELLDVRFIGPSTHAIQSLGDKIESKL
LADAAGVSTIPGFNGVVTSPAHAIQIAHEIGYPVMIKASSGGGGKGMRICYTDAQVEEGY
RLGSAEAKSFFGDDRLLVEKYVEDPHHIEIQVLSGKNPKTGELDILCFAERECSIQRRNQ
KVIEESPSPHLHPSTRREMIRQVKSLVREVNYESAGTVEFLVDKDQNFYFLEMNTRLQVE
HPVTEMISGDGYHSGNYVDLVHGMLEVAAGRVLGYEGANVRYTGHAIEARVYAEDPLRGF
LPSTGPLVKYAEPPALLNVGDNGETCNIRVDTGAVPGTIISPHYDPIISKIIGYSPLDRG
HAIKGLGLALDQYILRGVQHNVPFCRDVLRNNHFVKGYTPTGFIGQHYPNGFSGGRLSEK
EICELVVIAREIGKKRCMFGDAYLVQSRIDLERDCSITASVTKLPCADSGERSENDGSKA
AQAVVLCKVDHDPADDLALVSLPGEERALQVHGEDETGVLKLTMFGLDADILVMSRGEYE
LACHMNKPIPKDFGNFVLSPMPGTLISFAVEEGDVVEIGQELCVVEAMKMQNVIRSHKAG
AKVGKLHGVIGGSLRADEILMEF
NT seq
2050 nt
NT seq
+upstream
nt +downstream
nt
tttcgaaagatcctcatcgccaacaggggggaaatagccatccgagtcatccgcacggct
cgcaaactaaacatcaaaacagtcgccatctactccacagccgatgccaaatccctccac
gtttccatggcagatgaggcagtttgcattggtccaccggcaagcaacatgagttatttg
gatatagacaaggtttgtgcggcgattgaaatgacgggtagtgagggagttcatccgggg
tatggatttttgagtgagaatggattgttcgcgaagagggtagagttgttggatgtacgg
tttattggaccgtcgactcatgctattcaatctttgggagacaagattgaatccaagctc
ttggcggatgctgcaggagtgtcgaccattcctgggttcaatggtgttgtcacctctcca
gcgcatgccattcaaattgctcacgagattggatatccagttatgatcaaggcatcgtcg
ggtggaggaggaaagggtatgcgaatttgttacaccgatgctcaagtggaggaaggatat
cgattgggatctgccgaggccaagagtttttttggcgacgatcgtctgctcgttgaaaag
tatgtggaagatccacatcatattgagattcaggtattgtcgggtaagaatccaaagact
ggagagttggatatactgtgcttcgctgaacgtgaatgcagtattcaaaggagaaatcaa
aaggtgattgaagagagtccaagtccacatttgcatccttcaacaagacgagagatgatt
cgtcaagtcaagtctctcgtgagggaggtgaactatgagtcggccggtactgtggagttt
ctcgtggataaggatcagaacttttacttcctcgagatgaatacgagattgcaagtggag
cacccggtgacagagatgatttcaggtgacggttatcattccggaaattacgtggattta
gtacatggaatgttggaggtggcagcaggtcgcgtacttggatatgagggagccaatgta
cgctatactggacatgcgattgaagcacgtgtctatgctgaagatccgctgagaggtttc
ctgccgagtactgggccgttggtgaagtatgccgagcctccggcattgctgaatgtgggt
gacaatggagagacgtgtaatatccgcgttgacacgggtgctgtgcccggaacaatcatt
tctccacactatgatccaatcatctccaagatcattggttacagtccgttggatcgcggc
catgccattaaaggcctagggttggcccttgatcagtacattcttagaggggtacagcac
aacgttcccttttgtcgagacgtcttacgtaacaaccactttgttaaaggatacacacct
acagggttcattggtcagcactatcctaatggattctcaggaggaaggctatcggaaaag
gagatatgtgaattggttgtgattgcaagagagattggaaagaagagatgcatgtttggt
gatgcctacttggttcaatcaaggattgacttagaaagagattgcagtatcacagcatct
gtcaccaagttgccctgcgcagactcgggtgaaagaagtgaaaatgacgggagcaaggcg
gctcaagcggtagtgctttgtaaagtcgatcatgatccggctgatgatttggctctggta
tcgctaccaggagaggaaagagctctgcaggtacatggtgaggacgaaacaggagtgctc
aaattaacaatgtttggattggatgctgatattctcgtcatgagccgtggagagtatgaa
ctggcatgtcacatgaacaaaccgataccaaaagatttcggtaactttgttcttagccca
atgcccggaacgctgatcagtttcgccgttgaggaaggagacgttgtagaaattggtcaa
gagctgtgtgtagtggaagcaatgaagatgcaaaacgttattcgttctcacaaagctggt
gccaaagttggaaagctacacggtgtcattggcggaagtctccgtgctgatgagatattg
atggaattcg
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