Thalassiosira pseudonana: THAPSDRAFT_263489
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Entry
THAPSDRAFT_263489 CDS
T01078
Name
(RefSeq) platelet-activating factor acetylhydrolase beta subunit-like protein
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
tps
Thalassiosira pseudonana
Pathway
tps00565
Ether lipid metabolism
tps01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
THAPSDRAFT_263489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_263489
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_263489
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
THAPSDRAFT_263489
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
THAPSDRAFT_263489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_EIPR1
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
PEP5_VPS11_N
Beta-prop_Vps41
Ge1_WD40
Beta-prop_HPS5
Mala_s_1-like
Beta-prop_WDR75_2nd
WDR54
Pox_A_type_inc
PROPPIN
DUF1513
eIF2A
Motif
Other DBs
NCBI-GeneID:
7445002
NCBI-ProteinID:
XP_002292189
JGI:
263489
UniProt:
B8C7T8
LinkDB
All DBs
Position
9:186934..188496
Genome browser
AA seq
447 aa
AA seq
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MVLTDRQRSDLHGGIYEYFLSRGSDFAQVAEALARADPDSCKAPDSTATDESNGKKTTKS
TTTPILEKKWTAVPRLQRRVLELERQLTVNAKIHAHRTGGGSDGSSANPSGGIPARERRL
LPRPPATHTLQSHSAVVTTVSVHPVYTMAASGSEDGTIKLWDHESGEYLRTLRGHTNVVT
CVDFSPKGGYLASTSTDLSIKIWDVKEFTCVRTLRGHDHTISCVRFVPPTGAKIVVTASR
DSTVKFWDLETGFCDATVSDHSDWVRCLANTTTSSLALVATSGNDRTIYVYNAHEKREKV
AELRGHDHVVESLSFLCSSLLPKKGSAASRPTTSAAEGASSSWEYLASGSRDRTVRLWTV
ANGGSCLMTFRAHENWVRGVLIHPSGNHILSCGDDRSIRVFDIKSNRCLRTIEDAHPHFV
TSMAMHYTLPILVSGGVDHAVKCWQLD
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggtactaacagatcgtcaacgcagtgatctccacggaggcatctacgaatacttcctc
tcacgaggatcagactttgcacaagttgccgaggccctagccagagccgatccagactct
tgcaaagcacccgatagcacagcaactgacgaatccaatggcaaaaagacaaccaaatca
acaacgacccctatcctcgaaaagaaatggacagccgtgccccgtctccaacgtcgagta
ttggaactagaacgtcaactcacagtcaatgccaaaatccacgctcatcgcaccggtggc
ggatccgacggatccagcgccaatccatccggtggcattcccgcaagagaacgtcgactg
ttaccccgtcctccggccactcacacgctccaatctcattcggcggtggtgaccaccgtg
agtgttcatccggtgtacacaatggctgcctctggatcggaagatgggacgattaaactg
tgggatcacgaatcgggagagtacctccgtacgttgaggggtcatacgaacgttgtgacg
tgtgttgatttcagtcccaagggggggtatttggcatccacgtcgactgatttgagtatc
aagatttgggatgtcaaggagtttacgtgcgtgaggacattaagggggcatgatcacacc
atatcgtgcgtgaggttcgttcctcctacgggggcgaagattgttgttacggcgagtagg
gatagtactgtcaagttttgggatttggagacgggattctgtgatgctactgtgtcagat
cacagtgattgggttcgctgtttggctaacacaacaacgagttcattggcgcttgttgct
acttcgggaaatgacagaacaatctacgtctacaatgctcatgagaagcgagagaaggtt
gctgagcttcgaggtcacgatcacgttgtcgagtcactgtccttcctgtgctcgtcattg
ctacctaagaagggaagtgcagccagtcgtcctacaacgtctgcagcagaaggagcttcc
tcatcgtgggaatatctcgccagtggatcaagagaccgaactgtacgtttgtggactgtc
gccaatggaggatcgtgcttgatgacgtttagggctcacgagaattgggtgagaggtgtt
ttgattcatccgtctggcaatcacattttaagttgtggggacgatcgaagtattcgtgtg
tttgatatcaagtcaaatcgttgtttacgaacaatagaggacgcccatccacattttgtt
acttctatggcaatgcattacacccttcctatccttgtttcaggtggcgtagatcatgca
gtgaagtgttggcaattggactaa
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