Thalassiosira pseudonana: THAPSDRAFT_263509
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Entry
THAPSDRAFT_263509 CDS
T01078
Name
(RefSeq) mlh1-like protein
KO
K08734
DNA mismatch repair protein MLH1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03430
Mismatch repair
tps03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
THAPSDRAFT_263509
03460 Fanconi anemia pathway
THAPSDRAFT_263509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_263509
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
THAPSDRAFT_263509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
7449303
NCBI-ProteinID:
XP_002292221
JGI:
263509
UniProt:
B8C801
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Position
9:354672..357805
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AA seq
749 aa
AA seq
DB search
SKKIRPLPKEVVDRIAAGEVVQRPVSVVKELLENSLDADGTQIDIQCQKGGLESITITDN
GTGISPTSLPLACTRFATSKLVTVDDLKSIRTFGFRGEALASASMVGRVCISKTLQNNNC
AFKMHYRDGNPTSDPKLPTNKNSTATIKPKPSAGKEGTTITVQDLFYNIPSRRRAMEGRR
SERDEYDRILNCVQRYAVHEAKRGVGFVCRGGGGGGGGKGAAGRATTKDVIGHIFGTAVS
RELLPLNAGEGDVEAVTTGLITNGSYSAPKSSAAFLLFINDRLVESASLRRAVESIYSDA
LPKGGKPFVYLSLELPGPHVDVNVHPTKREVAFLHEDRLCVALAAAVKEVIGSATSSRTF
AVAASGALLAPEEKRVRVQPKKAIAMGEREGLVVSTASNVTTEIGESDSGAVDDAMAVDE
PEPQQIVDNTNQQQDQQQNEQPKKRHADESKQPPLSKKPYDPSRLVRTNSAAPAAPNAIV
VRINANNNIVRPKKISPTECDYESIAKLRGDIVSRNHQNLNETLRGASFVGAVSRSRSLI
QYGIDLLMINHRELARETFYQIALMKFNGMPIATLGGGGVDSDATHESLRVKVNKTNATL
AKQATSCLSEKADMLEEYFSIKFERRGKSLFVTGLPVLLEGHSPQPHALPLFLMRLATEV
NWMDERLCFQNVCTELGSYYSEPPVANDEEENAATEAPDYIDDEAKAFVKHTLFPAISFL
LVPPKEFATNGTVLKLANLTSLYKVFERC
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
tccaaaaagattcgccctctgcccaaagaggtagtggaccgtatcgctgcaggagaggta
gtgcagcgtcctgtcagcgtggtgaaggagttgttagagaatagtttggatgccgacgga
acacaaatagacattcaatgccaaaaaggaggactcgagtccatcacaatcaccgacaac
ggaacgggcatctcccccacctccctccccctcgcttgcactcgcttcgctacctccaaa
ctagtcacggtggatgatttgaagagtatacgaacgtttgggtttcggggggaggcgttg
gcgagtgcgagtatggttgggagggtttgtattagtaagacattgcaaaacaacaattgt
gcattcaaaatgcattatagagatggcaatccaacatcggatccaaaactacccaccaac
aaaaattccactgctacaatcaaaccgaaaccctccgcgggcaaagaaggaaccactatc
acagtccaagatctattctacaacattccctcacgacgtcgtgccatggaaggacggcga
agtgaacgtgatgaatatgatagaatattgaattgcgttcagaggtatgcagtgcacgaa
gcgaaacggggagtggggttcgtgtgccgtggcggaggtggaggagggggtggcaaaggt
gcagctggacgagctacaaccaaggatgtcattgggcatatctttggtacggcagtgagt
agggaactattacccttgaatgctggggagggagatgtggaggctgttaccacaggactc
atcaccaatgggtcgtactctgcaccaaaatcatctgcagcattccttctctttatcaat
gatcgtttagtagagagtgcctcgcttcgtagagcagtggagtcaatctattcagacgca
cttccaaaaggaggcaaaccattcgtctatctgtcattggaactgcctggacctcacgta
gatgtcaatgttcatccaacaaagcgagaggtggcattcttgcacgaggatagattgtgc
gttgcactagcagcggcagtgaaggaggttattggaagtgcgacttcttcgagaacattt
gcagtggctgcttcgggggcgttgttggcacccgaagaaaagagagttagagttcaacca
aagaaagccattgcaatgggagagcgggaagggcttgtcgtgtccactgcaagcaatgta
acaactgaaattggcgaatcagatagtggtgcggttgatgatgcgatggcagtggatgaa
ccagaaccacaacaaattgttgacaatacaaatcaacaacaagatcagcaacagaatgaa
caacccaagaaacgacatgcagatgagagcaaacaaccacctttatcaaagaaaccgtac
gatccctctaggttggtaagaacaaattctgctgctccggctgctccaaatgccatcgtt
gtgagaatcaatgccaacaataatattgtacgtcccaagaagatatctcccaccgagtgc
gattacgaatccatcgcaaagcttcgaggagacattgtatctcgcaaccaccaaaacctc
aacgagacgctacgtggtgcttctttcgtgggtgcggtatcgaggagtcgaagtctcatt
cagtacggcattgacttgcttatgattaatcatcgtgaacttgcacgggaaactttttat
cagattgcattgatgaagttcaatggcatgccgatagctacactcggtggaggaggtgtc
gattcagatgccacacatgaaagcttgcgggtgaaggtgaacaagacaaatgctacgttg
gcaaagcaagcaacgagctgcctctctgagaaagcagatatgctagaggagtacttctcc
atcaagtttgaaaggcgaggcaaatcactgttcgtcacggggcttccggttctcttggaa
ggtcactctcctcaaccgcatgcacttcctctcttcttgatgagactagcaaccgaagta
aattggatggacgaacggctatgcttccaaaacgtatgcacagagctaggttcgtattac
tcagagccaccagttgcaaatgacgaggaggaaaacgccgcaacggaagcccctgactat
atcgacgacgaggctaaagcttttgtaaagcacactctatttccagccatcagctttctt
ctagttcctccgaaagagttcgcgacaaacggaacggtgctgaagctagctaacctcacc
tccttgtacaaagtgtttgagaggtgctga
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