KEGG   Thalassiosira pseudonana: THAPSDRAFT_264276
Entry
THAPSDRAFT_264276 CDS       T01078                                 
Name
(RefSeq) hypothetical protein
  KO
K20178  vacuolar protein sorting-associated protein 8
Organism
tps  Thalassiosira pseudonana
Pathway
tps04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:tps00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    THAPSDRAFT_264276
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tps04131]
    THAPSDRAFT_264276
Membrane trafficking [BR:tps04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    THAPSDRAFT_264276
SSDB
Motif
Pfam: TPR_Vps8 TPR_Vps41 Clathrin TPR_VPS8_2
Other DBs
NCBI-GeneID: 7444298
NCBI-ProteinID: XP_002294191
JGI: 264276
UniProt: B8CD47
LinkDB
Position
15:complement(180189..182803)
AA seq 752 aa
MRYLLLAIDNAPEPEEFFSPTNKRLNLAQSHFEMLSGVCLEYCIVMRRLDLLFGPIFRCF
YEARMINVFLDVMESYILSDRLRYVAPEALVLFVSHCKDMKDLSMVERCLLHMDCSLMDF
DSILNLLKKNALYTGLFHVYSSGLNDYVSPLEVLFESIFDAADVADNLLGTRREEGVLGT
RFEHLYLKYCFTGKTFPKGNSIQPEDRIHTLRKELLSLLLREGSPPQRRQGLPPTTARGI
RASSYPFLRSLLLIDATALFECLESVLDDPNAKFIETTVDVHAVGSWEIECGTDNGHGEL
TENGSLRENERDPELLPDRQSIANILSTIVMSDSLVDFDHRFGSREQISLEDVLALLHAL
PRTSYELDEVLYTIEKAQLVRAALFLHKAGYYFNRAIDCYLKDRDDVFKKGVFEYARKEC
ISSSSDYEDGGANSSALLRNVLLRRLPELIELDAVQTAHLVGEIFVEDIDMILSSLRDID
SGRVEYGFLHAIISDLSKVDAVAAQELGANLTINHQHAYLSLMARFEPDMVYQYLSTNHN
YRLDDALKLCQDRRITDASAYLLERMGDVSGALQLMLQTLDSRMITLKSILQESKSAKEV
AGAKQILVAVLDLCERNKNDHLTLDNEQGPLLWFHVLDRLVNAKSLLRASKNASEYQAVA
TSTVLSELLLMTMQRMISNVSLFDLMHKITRDHSGSDLGEFREMLVSMLKTYSSELDVCS
NAVDVMYHDIRKMTIEKKCLKVNRVMLRCVCS
NT seq 2259 nt   +upstreamnt  +downstreamnt
atgaggtatctcttgctcgccatcgataatgcaccagagcctgaagaattcttttcgcca
accaacaaacgattgaacctcgctcagagtcactttgagatgctctcgggagtctgtctg
gagtattgcatcgtcatgcggaggctagatctgctgttcgggcccatctttcgctgcttc
tacgaggctcgcatgatcaatgtgtttttggacgtgatggaatcctacatattgagtgac
aggttgagatatgttgctccagaggcactcgttctcttcgtttcacactgcaaggatatg
aaagatttgtcgatggtggaacggtgcttgctccacatggattgcagcttgatggacttt
gactccatactgaatttgctgaagaagaacgccctctatactgggttattccatgtttac
tcgagtgggttaaacgactacgtttctccgttggaagttctatttgaatccatcttcgac
gcagcagatgtcgctgataaccttcttggtactcgtcgggaagagggcgtccttggcacc
aggtttgagcacttatacctcaagtactgcttcaccggaaagacatttcccaaaggtaac
tcaattcagccggaggatcgtattcatacacttcgtaaagagttgttatctctcctcctt
cgcgaaggtagtccacctcaaagacggcagggcttaccaccaacgacggctcgtggtatc
agggcatcttcttatcctttcctccgatcccttctcttgattgacgccacggcattattt
gaatgcttggaatctgtgttggatgaccccaatgcgaaattcattgagacaacggttgac
gttcatgctgttggatcttgggagattgaatgtgggacagacaatggacatggtgaactg
actgagaacggatctcttcgagaaaatgaacgagatcctgagttgctgccagatagacag
agcatcgccaacatcttgtcaaccattgtcatgtcggacagtctcgtggacttcgatcat
cgctttggatcaagagagcaaatatctctcgaagacgtcctcgctctcttacatgcattg
ccgagaacttcctacgagcttgacgaagtgctgtataccatagaaaaggcccaactggta
cgagcagcgttgtttcttcacaaagctggatactacttcaacagagctattgactgctac
ctcaaagatcgggacgatgtgtttaagaagggtgtgtttgagtatgctagaaaagaatgc
atatcatcttcatcagattacgaagatggtggagcaaactcaagtgctctgttgaggaat
gttctgctgcgaaggctgccagagctgattgaattggatgctgtgcaaactgctcatctc
gtgggtgagatctttgttgaagatattgacatgatcttgtcgtcgctgcgagacattgat
tcaggaagggtcgagtatgggtttctgcatgccattatatcggatctgtccaaagtcgat
gctgttgcagcacaagaactcggtgccaatcttaccatcaaccaccagcacgcctatctc
tctcttatggcacgattcgagccggatatggtgtatcaatacctgtcgacgaatcacaac
tatcgcctagatgatgctctcaagctgtgccaagatcgtcggatcactgacgccagtgct
tatctgttggagagaatgggagatgtctcgggtgcccttcagctcatgctacaaactttg
gactctcgaatgattacgctaaagagcatccttcaagagagtaaaagtgcaaaagaagtt
gctggtgcaaagcagatactcgttgccgtgctggatctctgcgaacgcaacaaaaatgac
cacttgactctggacaacgagcaaggcccattgctttggtttcacgttttggatcggcta
gtgaacgccaagagtctgcttcgtgcatcaaagaatgcatcagaataccaagcagttgca
acatcgacagttttgagcgagctgttgctaatgacaatgcaacggatgatatcaaatgta
tctctctttgatttgatgcacaagatcacacgtgatcactcgggtagtgaccttggggaa
ttccgtgagatgctcgtcagtatgcttaagacgtacagctccgagttggatgtatgctct
aatgccgtggatgtcatgtatcatgacatacgaaagatgacgatcgaaaagaagtgtctc
aaggtgaatcgtgtcatgctgcgttgcgtttgctcttga

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