Thalassiosira pseudonana: THAPSDRAFT_267952
Help
Entry
THAPSDRAFT_267952 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tps
Thalassiosira pseudonana
Pathway
tps04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
THAPSDRAFT_267952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_267952
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_267952
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_267952
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_267952
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
THAPSDRAFT_267952
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
THAPSDRAFT_267952
Membrane trafficking [BR:
tps04131
]
SNARE
SNARE associated proteins
Others
THAPSDRAFT_267952
Autophagy
Aggrephagy
Other aggrephagy associated proteins
THAPSDRAFT_267952
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
THAPSDRAFT_267952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_33
AAA_5
AAA_2
AAA_22
AAA_14
TIP49
RNA_helicase
NPHP3_N
AAA_17
nSTAND3
AAA_28
Mg_chelatase
AAA_18
AAA_7
ATPase_2
Parvo_NS1
IstB_IS21
ABC_tran
ResIII
Vps4_C
Viral_helicase1
NB-ARC
AAA_24
DUF815
Sigma54_activ_2
Zeta_toxin
Rad17
KAP_NTPase
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
7449785
NCBI-ProteinID:
XP_002286617
JGI:
267952
UniProt:
B8BPW0
LinkDB
All DBs
Position
1:complement(562393..565895)
Genome browser
AA seq
811 aa
AA seq
DB search
MVKTEKKDEDMKDALLGKKRSPNRLIVDDATNDDNSVISLSPAKMEELSLFRGDTVLIKG
KKGRDTVCIVLADETCDDSSVRMNKVVRKNLRVRLADIVTVANCGDVPYGKRIHILPLDD
TIEGVSGNLFDVYLKPYFLEAYRPVKKGDLFLVRSAMHPVEFKVVETDPAPYCIVAPDTV
IHCEGEPVKREDEEKLDDVGYDDVGGCRKQMAQIREMIELPLRHPALFKTLGVKPPRGVL
LYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIF
IDEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGATNRPNSMDPALRRFGR
FDREIDIGVPDENGRLEVFRIHTRNMKLDEDVDPEAIARETHGFVGADIAALCTEAAMQC
IREKMDLIDIEDEEIDAEILDSMAVNQDHFRHALGVSNPSSLRETVVEVPNISWDDIGGL
EDVKRDLKELVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLMAKAVANECQANFISV
KGPELLTMWFGESEANVRDVFEKARQAAPCVLFFDELDSIAQQRGGSSGDGGGAADRVMN
QLLTEMDGVGAKKNVFIIGATNRPDIIDTALMRPGRLDQLIYIPMPDYESRLGILRATLR
KSPIAKEVDLAYLAAQTDKFTGADLTEICQSACKLAIREEIERDIERGRLREEAGEEMEE
DDEDELEDSMPEILPRHFEHAVRNARRSVSDRDLAQYASFAQTLQQSRAAVTGAAGGSLA
TFAFPQGGGGMAAGAGGDAAAEEDDEEDLYS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagacggagaagaaagacgaagacatgaaagacgccctcctgggcaagaagcgc
agccccaaccgcctcatagtcgacgacgccaccaacgacgacaacagcgtcatctccctc
tcccctgccaaaatggaagagctctccctcttccgcggagacaccgtgctcatcaagggc
aagaaggggcgcgatacagtgtgcatcgtcttggcagacgagacgtgcgacgactccagc
gttcgcatgaataaggtcgtcaggaagaatttgagggtgaggctcgcggacatcgtcacg
gtggccaactgcggggacgtcccgtacggtaagaggattcacatcctccccctggacgac
accatcgagggagtctccggcaacctcttcgacgtgtacctcaagccgtacttcctcgag
gcgtaccgccccgtcaagaagggcgatctatttctcgtccgatcggccatgcaccccgtc
gagttcaaggtggtggagaccgatcccgccccctactgcatcgtggcgcccgataccgtc
atccactgcgagggagagcccgtcaaacgcgaagacgaggagaagctcgacgacgtgggc
tacgatgatgtgggaggatgccgtaagcaaatggctcagattcgtgaaatgattgaactt
cccctccgtcatcccgccctcttcaaaaccctgggagtgaagccaccccgcggtgttctc
ttatatggtcccccggggtcgggaaagaccctcatcgcccgtgccgtggccaacgaaacg
ggagccttcttcttcctcatcaacggtcccgaaatcatgtccaagatggcgggagaatcg
gaatccaacctgcgcaaagcgtttgaggaggcggagaagaatgcccccgcaatcatcttt
attgacgagattgattccattgctcccaagcgtgaaaagacgaatggggaggtggagaga
cgtatcgtgagtcagatgcttactcttatggatggattgaagcaacgtgcttcggtggtg
gtgattggggctacaaatcgtcccaactcgatggatcctgccttgcgtcgtttcggacgt
tttgaccgtgagattgacattggagttcctgatgagaatggtcgtttggaggtgttccgt
atccacactcgtaacatgaagctggatgaggatgtggatcccgaggcaattgctcgtgag
actcatggtttcgtgggagcggatattgccgcactttgtaccgaggcggctatgcagtgt
attcgtgagaagatggatttgattgatattgaggatgaggagattgatgccgagattttg
gatagtatggctgtgaatcaggatcactttaggcatgctttgggagttagcaatcctagt
agtttgcgtgagactgtggtggaggtgcctaatatttcttgggacgatattggtggtttg
gaagatgtcaagcgtgacctcaaggagctcgtgcagtacccagtggagcaccccgaaaag
tttgagaagtttggcatgtctcccagcaagggtgtgctcttttacggacctcctggatgt
ggaaaaacgctcatggccaaggctgttgccaacgaatgccaggctaacttcatctccgtt
aagggacctgagcttcttaccatgtggtttggagagtctgaggctaatgtccgtgatgtg
tttgaaaaggcacgtcaggctgctccttgtgttctcttctttgatgagttggattccatt
gctcagcagcgtggggggtcttctggagatggtggtggagcagcggatcgtgtgatgaat
caacttcttactgagatggatggagtgggtgctaaaaagaatgtgttcatcattggagct
accaatcgtcccgatatcattgatactgccctcatgcgacctggacgtcttgatcagctc
atctacatccccatgcccgactacgaatctcgtcttggaatcttgcgtgctactcttcgc
aaatctcctattgccaaagaggttgatcttgcgtaccttgctgctcagacggataagttt
actggtgctgatctcacagaaatctgtcaatctgcgtgtaagcttgccattcgtgaggaa
attgaacgcgacattgaacgtggacgtttgcgcgaggaagctggggaagagatggaagag
gacgacgaggacgagctcgaggatagcatgcccgagatcctccccaggcactttgagcac
gctgtgcgcaatgcccgtcgttccgtttctgatagggatttggctcagtatgcctcgttt
gctcagaccttgcaacaatctcgtgcggctgtcactggtgctgctggtggaagtttggca
acctttgctttccctcagggcggtggaggaatggctgccggtgccggcggagatgctgct
gccgaggaagacgatgaggaggatctttacagctaa
DBGET
integrated database retrieval system
