KEGG   Thalassiosira pseudonana: THAPSDRAFT_267997
Entry
THAPSDRAFT_267997 CDS       T01078                                 
Symbol
Rad54
Name
(RefSeq) rad54-like protein
  KO
K10841  DNA excision repair protein ERCC-6
Organism
tps  Thalassiosira pseudonana
Pathway
tps03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    THAPSDRAFT_267997 (Rad54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tps03036]
    THAPSDRAFT_267997 (Rad54)
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_267997 (Rad54)
Chromosome and associated proteins [BR:tps03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    THAPSDRAFT_267997 (Rad54)
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Other TCR factor
      THAPSDRAFT_267997 (Rad54)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HDA2-3 ResIII
Other DBs
NCBI-GeneID: 7446830
NCBI-ProteinID: XP_002286143
JGI: 267997
UniProt: B8BQH0
LinkDB
Position
1:1122573..1125238
AA seq 549 aa
MNDMSERDADEVPPGAVVYEGGLEVPAWINDRLFPYQRIGLRWMWELYCVGAGGCVGDEM
GLGKTVQVSSFLGAMAANRFIDSVLVVCPATMLSHWLSELAVWAPGLRRIMVHRSGETDD
YEEQGADAFCGTGIVLVTTYESIRRSPDVYASFDWSYVVLDEGQKIRNPDAEVTLAVKRL
RTPNRLLMSGTPIQNDLRELWSLFDFVFPGRLGTLPAFEAEFAEPIKRGGYSNASPMQVQ
LAYRCAIVLRDLINPYLLRRQKKDIKEVHRMPGKTEQVLFCRLSSKQRSLYEDYLRSDEV
MGVMRGSVQLLKAVTVLRKICNHPDLVVGPDGRTLDSVQEESSSDNDDDGCFYGDERFVE
VSGKLQVLAKILPLWHKQGHRFILFCQWRKTLNIIEQFTRKQNWKFARLDGNTNVASRQK
LVDKFNNDESYFCMLMTTRTGGVGLNVTGANRVVIFDPDWNPQTDAQARERAWRFGQKKD
VTVYRLITAGTIEEKIYQRQIFKTAITNQVLQDPKQRRLFSQKDLKDLFTLKADSIDSTE
TGDITKGRG
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgaacgacatgtctgaacgtgacgctgacgaagttcctccaggagcggtagtctatgaa
ggaggccttgaggtaccggcttggataaacgatcgtttgtttccgtaccaacgcattgga
cttcgatggatgtgggaactgtactgcgttggagctggaggatgtgttggagatgagatg
ggattgggcaaaactgttcaagtcagttcgtttctcggagcaatggctgccaatcggttc
attgattcagtactcgtggtatgtccagcaacaatgctatcacactggttgagcgaatta
gctgtgtgggctcctggattgcgccgtatcatggtacatcgatccggtgaaacagacgac
tacgaagaacaaggagcagatgcattttgtgggacgggaatcgttctcgtaaccacgtac
gagagcatacgacgctcaccagacgtttacgcgagctttgattggagttatgtggtgctc
gacgaaggccagaagattcgtaatccagatgcagaagtaactctagcggtgaaacggctg
agaactccaaaccggctgctgatgagcggcaccccgatacaaaatgatttgcgagagttg
tggagcttgtttgacttcgtcttcccgggcaggcttggcacgttacctgcatttgaggct
gagtttgcagagcctatcaagcgaggaggatactccaacgccagccccatgcaagtgcag
ctagcttaccggtgtgcaattgttttgagagacctaatcaatccctacctccttcgacgg
caaaaaaaggacataaaagaggtgcacaggatgcctgggaagacagagcaggtcctattc
tgccgtttgtcttccaagcagagatcactttacgaggattacttgaggtcggacgaggtc
atgggtgtcatgagaggctctgtgcagctactcaaggcagttactgttctgaggaagata
tgcaatcaccctgatttggtcgttggtcctgatggacgcactcttgattcagtccaagaa
gaaagctcgtccgacaatgacgatgatgggtgcttctatggagatgaacgattcgtcgaa
gtatcgggcaaacttcaagtgttagcaaagattctaccactttggcacaaacaaggacat
cgtttcattctcttctgtcagtggagaaagacactaaacatcattgagcaattcacgaga
aagcaaaattggaagttcgctcgcctagatggaaatacaaacgttgcttctagacaaaag
ctggtagacaagttcaacaacgacgaaagttacttctgtatgctgatgaccacacgtaca
ggaggagtgggtctgaatgtcactggtgcaaacagagttgtcatctttgaccctgattgg
aatccacaaacagacgcacaagcacgagagcgagcgtggcgatttgggcagaagaaggat
gtcactgtgtaccgactcattacggcaggcacaatagaagagaagatctaccaacggcaa
atattcaaaacagctatcaccaatcaagtgctacaagatcccaagcagagacggctgttc
tctcagaaagatctaaaggatctcttcactttaaaagcagacagcatagactctactgag
actggcgatatcaccaagggacgtggc

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