Entry |
|
Symbol |
Rad54
|
Name |
(RefSeq) rad54-like protein
|
KO |
K10841 | DNA excision repair protein ERCC-6 |
|
Organism |
tps Thalassiosira pseudonana
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:tps00001]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THAPSDRAFT_267997 (Rad54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:tps03036]
THAPSDRAFT_267997 (Rad54)
03400 DNA repair and recombination proteins [BR:tps03400]
THAPSDRAFT_267997 (Rad54)
Chromosome and associated proteins [BR:tps03036]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
THAPSDRAFT_267997 (Rad54)
DNA repair and recombination proteins [BR:tps03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
THAPSDRAFT_267997 (Rad54)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
1:1122573..1125238
|
AA seq |
549 aa
MNDMSERDADEVPPGAVVYEGGLEVPAWINDRLFPYQRIGLRWMWELYCVGAGGCVGDEM
GLGKTVQVSSFLGAMAANRFIDSVLVVCPATMLSHWLSELAVWAPGLRRIMVHRSGETDD
YEEQGADAFCGTGIVLVTTYESIRRSPDVYASFDWSYVVLDEGQKIRNPDAEVTLAVKRL
RTPNRLLMSGTPIQNDLRELWSLFDFVFPGRLGTLPAFEAEFAEPIKRGGYSNASPMQVQ
LAYRCAIVLRDLINPYLLRRQKKDIKEVHRMPGKTEQVLFCRLSSKQRSLYEDYLRSDEV
MGVMRGSVQLLKAVTVLRKICNHPDLVVGPDGRTLDSVQEESSSDNDDDGCFYGDERFVE
VSGKLQVLAKILPLWHKQGHRFILFCQWRKTLNIIEQFTRKQNWKFARLDGNTNVASRQK
LVDKFNNDESYFCMLMTTRTGGVGLNVTGANRVVIFDPDWNPQTDAQARERAWRFGQKKD
VTVYRLITAGTIEEKIYQRQIFKTAITNQVLQDPKQRRLFSQKDLKDLFTLKADSIDSTE
TGDITKGRG |
NT seq |
1647 nt +upstreamnt +downstreamnt
atgaacgacatgtctgaacgtgacgctgacgaagttcctccaggagcggtagtctatgaa
ggaggccttgaggtaccggcttggataaacgatcgtttgtttccgtaccaacgcattgga
cttcgatggatgtgggaactgtactgcgttggagctggaggatgtgttggagatgagatg
ggattgggcaaaactgttcaagtcagttcgtttctcggagcaatggctgccaatcggttc
attgattcagtactcgtggtatgtccagcaacaatgctatcacactggttgagcgaatta
gctgtgtgggctcctggattgcgccgtatcatggtacatcgatccggtgaaacagacgac
tacgaagaacaaggagcagatgcattttgtgggacgggaatcgttctcgtaaccacgtac
gagagcatacgacgctcaccagacgtttacgcgagctttgattggagttatgtggtgctc
gacgaaggccagaagattcgtaatccagatgcagaagtaactctagcggtgaaacggctg
agaactccaaaccggctgctgatgagcggcaccccgatacaaaatgatttgcgagagttg
tggagcttgtttgacttcgtcttcccgggcaggcttggcacgttacctgcatttgaggct
gagtttgcagagcctatcaagcgaggaggatactccaacgccagccccatgcaagtgcag
ctagcttaccggtgtgcaattgttttgagagacctaatcaatccctacctccttcgacgg
caaaaaaaggacataaaagaggtgcacaggatgcctgggaagacagagcaggtcctattc
tgccgtttgtcttccaagcagagatcactttacgaggattacttgaggtcggacgaggtc
atgggtgtcatgagaggctctgtgcagctactcaaggcagttactgttctgaggaagata
tgcaatcaccctgatttggtcgttggtcctgatggacgcactcttgattcagtccaagaa
gaaagctcgtccgacaatgacgatgatgggtgcttctatggagatgaacgattcgtcgaa
gtatcgggcaaacttcaagtgttagcaaagattctaccactttggcacaaacaaggacat
cgtttcattctcttctgtcagtggagaaagacactaaacatcattgagcaattcacgaga
aagcaaaattggaagttcgctcgcctagatggaaatacaaacgttgcttctagacaaaag
ctggtagacaagttcaacaacgacgaaagttacttctgtatgctgatgaccacacgtaca
ggaggagtgggtctgaatgtcactggtgcaaacagagttgtcatctttgaccctgattgg
aatccacaaacagacgcacaagcacgagagcgagcgtggcgatttgggcagaagaaggat
gtcactgtgtaccgactcattacggcaggcacaatagaagagaagatctaccaacggcaa
atattcaaaacagctatcaccaatcaagtgctacaagatcccaagcagagacggctgttc
tctcagaaagatctaaaggatctcttcactttaaaagcagacagcatagactctactgag
actggcgatatcaccaagggacgtggc |