Thalassiosira pseudonana: THAPSDRAFT_268010
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Entry
THAPSDRAFT_268010 CDS
T01078
Symbol
RPC2
Name
(RefSeq) DNA directed RNA polymerase III, second largest subunit
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THAPSDRAFT_268010 (RPC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_268010 (RPC2)
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THAPSDRAFT_268010 (RPC2)
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
THAPSDRAFT_268010 (RPC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
7442904
NCBI-ProteinID:
XP_002286749
JGI:
268010
UniProt:
B8BQM2
LinkDB
All DBs
Position
1:complement(1244719..1248543)
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AA seq
1108 aa
AA seq
DB search
MRQHIDSFDHFVNVEMRQIVQVSRWQLIRSDYDPKFYLRYTDCWVGEPSIDEDSYATTQA
TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQ
MKECPYDPGGYFVIKGVEKVILIQEQLSKNRVIIEEDSKTGCVSASITSSTRERKSKAYI
FIKNGRLFLKHNTLAEDVPICVAMKAMGVESDLEFVQSVGSEPEVIDALALSLEEPSKLG
IVTQRHALKYIGNKMRAKRGAFGSTRKLSPEDEARDVFANVVLSHVPVVNFDFHAKTIYI
GHIVRRLVMVQLGKSSLDDKDYYGNKRLELAGSLLSLLFEDLFKHFNTDLKKQTDMVLSK
PNRAQAFDVIKTIRPDSIAYGMMSAISSGNWVLKRFRMDRAGVTQVLSRLSYISALGMMT
RVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEESEAIER
LCRDCGVEDVTLLSGHEIHSRNAFLVLLNGLIVGVHTRPLWLVKSLRSLRRQGQMGEFVS
LYLHDGQKAVHIATDGGRVCRPLIIVDEKTALPRLKQVHIEGLALGTIHIKDLLRQGVVE
YVDVNEENNCLIAVTERELEWMAYTHLEIDPMTLLGVVAGLIPNPHHNQSPRNTYQSAMG
KQAIGTVAINQYSRFDGMLYTMVYPHKPMVKTRTLDLINFDNIPAGQNACIAVMSYSGYD
IEDAVVLNKASVDRGFGRCMVLKKSQASVRRYQNGTMDRTCGAPDPSAFPSGEEDKRYAR
YRGIDKDGLCMVGELMENGTVMVNKESPTDTSTPVERLAQVSYKYSGMSYRSSAPSYVDR
VLISSNENEQFLIKVMLRQVRRPELGDKFASRHGQKGVCGLIVPQVDMPFNEQGFPPDLI
MNPHGFPSRMTVGKLIELLVGKAGVFEGRQAYASAFGEEFGSTDTVQSAELALIRNGLNY
TGKDIFYSGVNGAPLDAYIFSGPVFYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRSRDG
GLRLGEMERDCLIAYGASNLIMERLMHSSDAFSASVCMTCGLLQYQNWCQYCRSGEKVSD
IRLPYACKLLFQELQAMNVLPRLRLKDV
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaggcagcatattgattcgtttgatcactttgtcaatgtggagatgaggcagattgtt
caggtgagtaggtggcagctgatccgatctgattacgatcccaagttctacctccgctac
actgactgttgggtaggcgaaccctccatcgacgaggactcgtacgccacaacccaagcc
acgcccttccaatgtcgccttcgcgattgtacctacagcgccccaatatacgtcaacgtt
cgctacactcgtggaagacagattgtcgtcaagaaaaaggtgatgattggtcggatgccg
atcatgttgcgttctagcaagtgcctcttgagggacaagtcggagagagaattagcacag
atgaaggaatgcccatacgaccctggtggatactttgttatcaagggagtggagaaggtt
atcttgattcaggagcagctgtcaaagaatagggtaattattgaggaggacagtaagacg
ggttgcgtgtcggcctccattaccagttctacccgggagcgtaagtcaaaagcctacatc
ttcatcaagaatggccgattgttcttgaagcacaatactctggcggaagatgtaccgatc
tgtgtagcaatgaaggcaatgggagtggaaagtgatttggaatttgtgcagagtgttgga
tcggagccggaggtgattgatgctctcgccttgagtttggaagagccatccaagttgggc
attgtaacacaacgtcatgcattgaaatacattggaaacaagatgcgagccaagaggggt
gcattcggaagtacgaggaagctcagcccagaagatgaagcgagagatgtgtttgctaat
gttgtgttatcgcatgtgcctgtggtcaactttgacttccatgcgaagactatttacatt
ggacacatcgtgagacggttggtgatggtgcagctgggaaagagctcattggatgacaag
gattattacggaaacaagcgtttggaattggcaggcagtcttctctctctgttgtttgaa
gacttgttcaagcatttcaatactgatttgaagaaacagacggacatggtgctctccaaa
cccaaccgagcacaagcttttgatgtcatcaagactattaggcctgactccatcgcctat
ggaatgatgtctgctatctccagtggtaattgggtgttgaagcgatttcgcatggatcgt
gcaggagttactcaggtattaagccgtctctcctatatcagtgcattgggaatgatgaca
cgtgtcaactctcagtttgaaaagaccaggaaggtctcggggccacgatcgttgcagccc
agtcaatggggaatgttgtgtccagctgatacacccgagggagaggcttgcggtttggta
aagaatcttgcgctgcttgctcacatcaccaccgatgaagagtccgaggcaattgaacgt
ctatgtcgtgattgcggagtagaagacgtgacgttgttatctggccacgaaattcattca
aggaatgccttcttggtgttattgaacggtctcatcgttggagttcacactcgtcctcta
tggttagttaagagtcttcgctctcttcgtcgtcaaggtcaaatgggagagtttgtcagt
ctgtaccttcacgacgggcaaaaggctgtgcatatcgctacagatggaggccgagtgtgt
cgtcccttgattattgttgacgaaaaaactgctcttccgcgattgaagcaggttcatatt
gagggcttggcactaggaactattcatatcaaagacttgctgcgacaaggagttgtcgag
tatgtggatgtcaacgaagagaacaactgtttaattgcggttacagagcgtgagctggag
tggatggcttacacacatttggagattgacccaatgacattgttgggagttgttgctgga
ctgattccaaatcctcaccacaaccagagtccaagaaacacctatcagtctgcgatggga
aagcaagcgattggcacagttgccatcaaccagtactcgcgatttgacggtatgctctac
accatggtgtatccgcacaaaccgatggtcaagactcgcactcttgacctgattaacttt
gacaacattcccgctggtcagaatgcttgcattgccgtgatgagttacagtggatacgat
atagaagatgctgttgtattaaacaaagcctcagttgatcgtgggttcgggcgttgcatg
gtacttaagaaatcccaagccagcgttcgacgatatcaaaatggaaccatggatcgtacg
tgtggcgctcctgatccttctgcattcccttcaggggaagaggacaagcgttatgctcgt
tatcgtggcattgataaggatggcttgtgcatggtgggcgaattgatggagaatggtaca
gtcatggtgaacaaggaatcgccgacggatacaagcactcctgttgagaggttggcacaa
gtcagctacaagtactcgggaatgtcttatcgatcatcggcaccctcgtatgttgaccgt
gtcctcatttcgtcaaacgagaacgaacaattcctaatcaaagtcatgctgagacaagtg
aggagaccagagcttggggacaagtttgcttctcgtcacgggcagaagggagtctgcggt
ctcattgttcctcaggtagacatgccttttaacgaacaaggctttccgcctgatctcatc
atgaatcctcacgggtttccgtcgcgaatgacggtgggaaagctcattgaacttcttgta
ggaaaggccggagtgtttgagggaaggcaggcgtatgcttcggcatttggggaagagttt
ggatcgactgacaccgttcagagtgctgaactcgctttgatacgcaacgggttgaactat
actggaaaagacatcttttacagcggtgtcaatggggctccgcttgatgcctacatattc
tctggcccagtgttctatcagaagctcaaacatatggtactcgacaaaatgcatgctcgt
tctcgcggtcctcgtgctgttctaactcggcaacccacggaaggacgttctcgtgacgga
ggactacgtcttggagagatggaacgtgattgtctcattgcatacggcgctagcaacctt
atcatggagcgtctgatgcattcaagtgatgctttttctgcatcggtttgtatgacgtgc
ggcctgttgcaatatcagaattggtgccaatactgcaggtcgggagagaaggtatcagat
attcgtctgccgtatgcttgcaagttgctgttccaagagcttcaagcaatgaatgtgctg
ccaaggttacgtctgaaggacgtttag
DBGET
integrated database retrieval system
