Thalassiosira pseudonana: THAPSDRAFT_268049
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Entry
THAPSDRAFT_268049 CDS
T01078
Symbol
ATH1
Name
(RefSeq) ATP dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_268049 (ATH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_268049 (ATH1)
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THAPSDRAFT_268049 (ATH1)
Spliceosome [BR:
tps03041
]
Complex C
Other components
Step II factors
THAPSDRAFT_268049 (ATH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
S1
AAA_19
nSTAND3
TsaE
AAA_30
AAA_14
NB-ARC
ABC_tran
AAA_7
AAA_16
Cas3-like_C_2
SRP54
OB_RRP5_4th
T2SSE
Motif
Other DBs
NCBI-GeneID:
7445157
NCBI-ProteinID:
XP_002286269
JGI:
268049
UniProt:
B8BR58
LinkDB
All DBs
Position
1:1712985..1717018
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AA seq
1191 aa
AA seq
DB search
MAPPLPNADGTTTSTKKKKKNTEDEPPLTAVERLQSLNLVSRVASEWNNHLGISDRTLAE
FVINLAEKRIKSFLKDEFVKEDGSLYNVALTDGSSDKIRVALMDDKKKVKRAKSQKQQRG
DGLEVPLEQGFYEHDKDTNGDGDMSNVHQRSRNKRRWDDNDAKDGNGEPKDSGKRAMSNL
PAWMTQKSDEEKKSADVRETSQRSKSNLPAWMTKQQSGGAKDGLQLYQIFRGTVQRVLDF
GIVVDFNVPGNSEKASGMVHLTHVTKNRIEKPKDAGFRPGQSVYVKLISIGKRGASAGAG
EGGLMLSLKDVDQSSGKDLMPHRSAAAMGTGDYSSKSDTASNTAASASAAVEEEADNITQ
RQLQGLTEQELFEAQQLIRSGVLPVEQYPTFDNEGGLGMLAQETTEEQTEVELADFEPSF
LRGQTRRSGRDLEPIRIVKNPDGSLQRAAMQQGTLAKERRELRQAQANQLVDSIPKDLNR
PWEDPLPEAGERHFAQELRSINMSAFDGAPEWKQKAESKTLSYGIISNRSIKDQRESLPI
YRLKPELMRAMSENQVLVVIGETGSGKTTQMTQYMHELGITKNGMIGCTQPRRVAAVSVA
KRVSEEFGCTLGEEVGYSIRFDDATSKETIIKYMTDGMLMREYLADNDLKRYGALMLDEA
HERTIHTDVLFGLLKDLMRRRPDMKLIVTSATLDAEKFSSYFFECPIFTIPGRTFPVEIL
YTKEPESDYLDAALITIMQIHLSEPAGDILLFLTGQEEIDTACETLFSRMKALGDLAPEL
IILPVYSSLPSEMQSRIFEPAPPGTRKCIVATNIAEASLTIDGIYYVVDPGFSKQKAFNA
KLGMDSLVVTPISQASARQRAGRAGRTGPGKCYRLYTEMAYRNEMLPTNIPEIQRTNLGN
VVLQLKAMGINDLLGFDFMDPPPVATLVGAMEGLNALGALDDEGLLTRLGRKMAEFPLEP
NLSKMLLLSVDLGCSDEILTITSLLSVDNPFYRPRDKQGQADMKKAKFHQAEGDHLTLLA
VYKAWEASKFSNPWCFENFIQARSMKRAQDVRKQLVTIMDRYKLDILSSGKNYKKICMAI
TAGFFTNAAKKHPQEGYLTLVDQNPVYIHPSSAVFNKNPEWVIYHELVLTTKEYMRNVMV
IDAKWLIELAPSFYKKADPNKMTKSKRMEKIEPLFDRFNPKDSWRLSRRKG
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacctctccccaacgccgacggcaccaccacctctaccaagaagaagaagaaa
aataccgaggatgaaccgcccctaaccgcagttgaacgtctccaatcactcaacctcgtc
tcccgcgtagcatccgaatggaacaaccacctaggcatatccgatcgtaccctcgccgag
tttgtcatcaacctggcagagaagaggattaaatccttcttaaaagatgagtttgtcaag
gaggatggatcactatacaacgtggctctaacggatggatcttctgataagattcgtgta
gctctcatggatgataagaagaaggtcaagagggccaagtcacagaaacagcagagaggt
gatggattggaagtgcctttggagcagggcttttacgagcacgataaggacacgaatggg
gatggagatatgagtaatgttcaccagaggtctagaaacaagaggcgttgggacgataat
gatgccaaagatggaaatggcgaaccaaaggactcgggaaagcgtgcaatgtctaatttg
cctgcgtggatgacgcaaaagtctgacgaagaaaagaagtcggccgacgtcagagagact
agtcagcgttccaaatctaatcttcctgcatggatgacgaagcaacaatcggggggagcc
aaagatggattgcaactgtatcaaatctttaggggaacggtacaacgtgtacttgatttt
ggtatcgttgttgatttcaacgttcctggtaacagtgaaaaggcttcgggcatggtgcat
ctcacacacgtgacaaagaatcgtattgaaaagccaaaagatgcaggttttcgtcctggg
cagtcagtgtatgtgaaacttatctccatcggtaaacggggcgcttcggcaggtgccgga
gaaggagggttgatgctaagtctcaaggatgtggaccagagttcggggaaggacctcatg
cctcatcgatctgctgcagcaatggggactggggactattctagcaaatccgatacagcg
agtaacactgcggcatcggcatctgcagctgttgaagaggaggcggataatatcacacaa
cgtcaattgcagggtttgacagagcaagaactgtttgaggcacagcagttgattcgatct
ggagtgttgcccgtggaacaatatccaacgtttgacaatgagggggggttgggaatgctt
gcacaggaaacgacagaagaacaaacggaggtggaattggctgactttgaaccatccttt
ttgcgtggtcagactcgtcgttcggggagggacttggagccgattcgtatagtaaagaat
cctgacggttctttgcagcgcgcggcgatgcaacagggaacgttggccaaagaacgtcgt
gagctgcgccaagcacaagccaatcagttggtagattctattcccaaagacctcaatcgt
ccgtgggaggacccacttcctgaggccggagaacgtcatttcgcacaggagctgcgtagt
atcaacatgagtgcctttgatggagcaccagagtggaaacaaaaggctgagagtaagacc
ttgtcgtacggtatcatctccaacaggtcaatcaaagatcagagggagagtttgccaatc
tacaggttgaagccggagttgatgcgtgcaatgtccgagaatcaggtgcttgtcgtgatt
ggtgaaacgggttccggaaagacgacccaaatgactcagtacatgcacgaactcggcatt
acaaagaatggaatgattggatgtacccagccgaggcgtgtcgccgcagtctcagtcgcc
aaacgtgtctcagaagagtttggatgtactctgggggaagaggttggttactccattcgt
tttgatgacgccacgtccaaggaaacaatcatcaagtacatgactgacggtatgctcatg
agggaatatctagctgacaatgacttgaagaggtatggggcactgatgttggatgaggca
cacgaacgcacaatccacacggatgttttgttcggattgttgaaggatctcatgcggcgt
aggccagacatgaagctcatcgtcacgtcggctacgttggacgctgaaaagttctctagc
tatttctttgaatgccctatctttacgattcctggaaggacgttccccgtcgaaatcctc
tacaccaaagagcccgaaagtgactaccttgatgcagcattgatcacgatcatgcagatc
cacctatcagaaccagctggagacattcttctcttcttgacgggccaggaggagattgat
acggcatgcgagacattgttcagccgtatgaaggcactcggagaccttgcacctgagctg
attatccttcccgtgtactcgtctcttccttccgagatgcaatcacgaatctttgaaccg
gctcctccgggaacacgaaagtgtattgttgctaccaacattgcagaggcttctcttact
attgacggtatctactatgtcgtggatcctggcttctcgaagcaaaaggccttcaatgca
aagctgggcatggactcacttgttgtcactccaatctcccaagccagtgctcgtcagagg
gctggtcgtgctggacgtaccgggccgggaaagtgttatcgactctatactgaaatggcg
tacaggaatgagatgcttccgaccaacatccccgagattcagcgaaccaacttgggtaat
gtcgttctgcaattgaaagcaatgggaatcaacgatttgttgggatttgactttatggat
ccacctccagtggccactcttgttggtgcaatggaagggctgaatgctcttggagcattg
gacgacgaaggattgctgactaggctcggacgcaagatggcagagtttcccttggaaccc
aatctctccaaaatgctgttgctctcggtggatttgggctgctctgacgagattcttaca
atcacttccttgctaagtgttgacaatcccttctatcgtcctcgtgataagcaagggcag
gctgatatgaagaaggcaaagttccaccaagcagaaggagatcacttgacgttgcttgct
gtgtacaaagcatgggaggcatccaagtttagcaacccttggtgctttgagaactttatc
caagcacgaagtatgaaacgtgcacaagacgtgaggaagcagcttgtaaccatcatggac
agatacaagctcgacattttgagttccggaaagaactacaagaagatttgcatggcaatc
acggctggcttcttcaccaacgcagcaaagaagcatcctcaggaaggttatcttacgttg
gttgatcaaaatcctgtctacatccatccatcatctgctgtattcaacaagaatcccgaa
tgggttatttatcacgaattggtgttaacaacgaaggagtacatgagaaatgtcatggtc
attgacgctaagtggttgatcgagctggcaccatccttctacaagaaggccgacccgaat
aagatgaccaagtccaaacgcatggagaagattgagcccctattcgatcgtttcaatcca
aaggattcgtggaggttatcgaggcgcaagggatag
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integrated database retrieval system
