KEGG   Thalassiosira pseudonana: THAPSDRAFT_268582
Entry
THAPSDRAFT_268582 CDS       T01078                                 
Symbol
DHC2
Name
(RefSeq) probable DNA helicase
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
tps  Thalassiosira pseudonana
Pathway
tps03440  Homologous recombination
tps03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    THAPSDRAFT_268582 (DHC2)
   03460 Fanconi anemia pathway
    THAPSDRAFT_268582 (DHC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tps03032]
    THAPSDRAFT_268582 (DHC2)
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_268582 (DHC2)
Enzymes [BR:tps01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     THAPSDRAFT_268582 (DHC2)
DNA replication proteins [BR:tps03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    THAPSDRAFT_268582 (DHC2)
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     THAPSDRAFT_268582 (DHC2)
    Bloom's syndrome complex (BTR)
     THAPSDRAFT_268582 (DHC2)
   FA (Fanconi anemia) pathway
     THAPSDRAFT_268582 (DHC2)
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind RQC ResIII Eclosion
Other DBs
NCBI-GeneID: 7452772
NCBI-ProteinID: XP_002288630
JGI: 268582
UniProt: B8BWN4
LinkDB
Position
3:2391313..2393039
AA seq 518 aa
MKGRDVFVLMPTGGGKSLCYQLPAWCCPGLSVIISPLLSLIEDQVQSMTKLGVRSVFLNS
AQSWEDEQRNIVDELRRTPIHGGIKLLYITPEKLAHSNMIKGVLSNLANNGRISRFVVDE
AHCLSDWGHDFRPDYNQLGCLRRDYPNVPLMALTATANKKVVSDAIRALGMRNEYSYRSS
FNRPNLHYEVRRKDNKTVDTIADYIAERRNDSGVIYCLSRKDCETLSDKLNNKLREKGFR
DVRVSYYHAELDQRERHQRHHAWSLGHISVLCATIAFGMGIDKPDVRYVMHYSMPKSITH
YYQESGRAGRDGGNADCILFYAYKDKKTLEMMIRKAAGHNQRSQATLRKIDHLYTCLRYC
ENTFECRRTLQLQFFGEMFEKHKCNKTCDNCRLGLVEEKRDMTNSAREILQLLDSRGRGV
TLHQLAELWRGTKSKAHTKFLITENLNGYGKGKAVSKSETDALVHAMVFEGVIEELSEET
TGGFAADYVHPGKNAALVQSGRQQFFVSFPKDPPKAAA
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgaaagggagagacgtctttgttctcatgccgactggtgggggaaagtcgttgtgttac
caactcccagcatggtgctgccctggactatcggtgattatatctccgttactgtcgcta
attgaggatcaagtccagtctatgaccaaactgggtgtaagatctgtgtttcttaactct
gcacaatcatgggaagacgaacaaaggaacattgtcgatgagctacgtcgtactcctatc
catggaggtatcaagctgctctacatcactccggagaagctggctcattcaaatatgatc
aagggtgtgttgagcaacttggccaacaatggtcgcatcagtcgctttgttgttgacgaa
gctcattgtctgagtgattgggggcacgactttcgtcctgactacaatcaactgggctgc
cttcgcagagactatcctaatgttccgctcatggcattgactgccacggccaacaaaaaa
gtagtatctgatgccatccgagctttgggcatgaggaatgagtacagctacagatcatcc
ttcaatcgtcccaatctccactatgaggtacgacgcaaagacaacaaaacggtggatacc
attgcagattacattgctgagcgacgcaacgattcaggagtgatctattgtttgagtcgt
aaggattgtgagactttgtctgacaagctgaacaataagctacgagagaagggcttccgt
gacgtacgcgtttcgtactaccacgcagaactggatcaaagggagaggcaccagcgtcat
catgcttggagtttgggtcacattagtgttctctgtgcgacgatcgcctttggcatgggt
attgataaaccagatgtccgatacgtcatgcattactcaatgccaaagtcaatcactcac
tactatcaggagagtggacgagctggtagagacggaggcaacgcagattgcattttattc
tatgcctacaaggacaagaagactttagaaatgatgattcgaaaggcggcaggtcacaac
caacgcagtcaggcaaccctccgaaagattgatcacctgtacacttgtctccgttattgc
gaaaacacgtttgaatgtcgcaggactcttcagcttcagttcttcggggagatgtttgaa
aagcacaaatgcaacaagacgtgcgataactgccgtctcggactagtggaggagaaaagg
gacatgacaaattcagctcgcgaaatccttcagttacttgacagccgaggacgtggtgtt
actctccatcaactcgctgagttgtggcgtggtacgaaaagcaaagcccatacaaagttc
ttgatcactgagaatctcaatggatacggcaaaggcaaggcggtcagcaagtctgagaca
gatgctcttgtacatgcaatggtgtttgagggcgttattgaagagctttctgaagagaca
actggtgggtttgcagccgactatgtccatccagggaagaatgcagctttggtacagagt
ggcaggcagcaattctttgtcagttttccgaaagatccacccaaggcagcggca

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