Thalassiosira pseudonana: THAPSDRAFT_268616
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Entry
THAPSDRAFT_268616 CDS
T01078
Name
(RefSeq) exportin1
KO
K14290
exportin-1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03008
Ribosome biogenesis in eukaryotes
tps03013
Nucleocytoplasmic transport
tps03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_268616
03008 Ribosome biogenesis in eukaryotes
THAPSDRAFT_268616
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
THAPSDRAFT_268616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_268616
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_268616
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_268616
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_268616
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
THAPSDRAFT_268616
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
THAPSDRAFT_268616
Pre-60S particles
THAPSDRAFT_268616
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
THAPSDRAFT_268616
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
THAPSDRAFT_268616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRM1_C
Xpo1
CRM1_repeat_2
CRM1_repeat_3
CRM1_repeat
IBN_N
Motif
Other DBs
NCBI-GeneID:
7442071
NCBI-ProteinID:
XP_002289630
JGI:
268616
UniProt:
B8C129
LinkDB
All DBs
Position
4:complement(318620..322378)
Genome browser
AA seq
1084 aa
AA seq
DB search
MTSIEAAAQALLTPNPADFDVNLLDQVVTAAYNPVDPNRAVANKALMALQESPDVWTKAD
AILERAQNPQSRFFGLQVLDDAIRIRWKVLPPEQREGIKNYVVGKVIQISSDEALMKQER
VFISKLNLTLVQILKQEWPHNWPSFIPDLVGSSKTSEVLCENNMQILKLLSEEVFDFSRD
QMVTEKVKKLKESLNSEFAAIYHLCEFILEHSQRPSLLKVTLQTLQRFLTWIPLGFIFQT
QLIDILLNKFFPEPIFRNDTLECLTEVGSLTDLEPEYDPLFRTLFAGFLTKLGAVFSPET
ELIGPFENGSEDDQIFIQRLALFLSGFFKAHLKVLETPDTQQSLITGLYYLVRVSEVDDV
EIFRICLEAWHMLAFDLYQTENEFKMRLGSQSSVLNLGGNVNSNAAASRKYMYGPVLTGV
RKVMIAKMAKPEEVLIVEDENGDIVRETTKDTDVIAQYKTMRETLVYLTHLNSDDTESIM
LAKLTAQVDGTEWSWNNLNTLCWAIGSISGAMTEDEEKRFLVTVIKDLLGLCEYKRGKDN
KAVVASNIMYVVGQYPRFLKAHWKFLKTVVNKLFEFMHEVHPGVQDMACDTFLKIATKCK
RKFVTLQTDERVPFIVELVDSLPTIISDLEPHQIQAFYEACGCMLSDKGPAVTVDRGDLM
KKLMELPNRQWKLIMDKANSNVESLVEPNTIKEIIKILKTNNKICGTIGSIYATQLQTFF
MDLLNVYKVYSERISTTIAQQGAVATQLSLVRTMRSAKKEVLRLLIVFIEKSGPPESDPQ
AVAEGFIPPVLDPILGDYQRNIPNARDPEVLVLFTTVIEKLKGQILSGVPRIMEAVFECT
LQMITVNFEDFPEHRIRFFEFIRAINTHCFQALFNIPAEHQKLVIDSVVWAMKHTERNIS
DTGLDILYDLLQNVGKTPNIAQGFYQQYLLALIQDVFAVMTDRLHKSGFKMHATLLRHMF
HLVQMNQVTVPLFDPANAPPGQTNPAFLREHISNLLIQSFPNLTRSQVSKFVDGMFDLNM
DLPTFKTHLRDFLIQLKEFSSEDNSGLFGEEQEEQQRERMEAQEASRRAVPGLLKPSEII
DDDL
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaatagaagccgcagcccaagccctcctaacccccaaccccgccgactttgac
gtcaacctcctcgaccaagtagtcaccgcggcctacaaccccgtggatcccaaccgtgcc
gtggccaacaaggcgttaatggcgctgcaggagagtccggacgtttggacgaaggcggat
gctattttggagagggcgcagaatccgcagagtcgtttttttgggttgcaggtgttggat
gatgctataaggattagatggaaagtcctcccaccagaacaacgagaaggcatcaaaaac
tacgtagtaggcaaagtcatccaaatctcctccgacgaagccctcatgaaacaagagcga
gtattcatctccaaactcaacctcaccctcgtccaaatcctcaaacaagaatggccacac
aactggccctccttcatccccgatctcgtcgggtcctccaaaacctccgaggtattgtgc
gagaacaacatgcagattctaaaactgttgagtgaagaggtatttgatttctcgagggat
caaatggttacggagaaagtgaagaagttgaaggagagtctcaatagcgagtttgcggcg
atttatcacctctgtgaattcatcttggagcatagtcagaggccgagtctgctgaaggtg
actcttcagaccttgcagcgtttcctcacgtggattccattggggttcatctttcagacc
caactgattgacatccttctcaataagttcttcccggagccaatctttcgtaatgatacg
ttggaatgcttgacggaggtgggaagcttgactgatttggagccagagtatgatccgttg
tttcgcaccttgttcgctggcttcttgaccaagttgggggcggtgtttagtccggagacg
gaattgattgggccctttgagaatggctcggaggatgatcagatctttattcagaggctt
gccctgtttctgtcggggttctttaaggctcatttgaaggtgcttgagacgccggatacg
cagcaatctctcattacgggtctgtactacctcgtgagggtgtcggaggtggacgatgtt
gagatctttcgaatctgtctcgaggcatggcacatgcttgcttttgacttgtaccagacg
gagaatgagttcaagatgaggcttggatctcaatcctctgttctcaacctaggtgggaac
gtcaactccaacgccgctgcgagcaggaagtacatgtacggtcctgtcctcaccggtgtc
cgtaaggtcatgattgctaagatggccaagcctgaagaagttcttattgtggaggatgaa
aatggtgatattgtgagggagactacgaaagatacggatgtgattgcacagtacaaaacg
atgagggaaacgttggtgtatttgactcacttgaacagtgatgacaccgagagcatcatg
ttggccaagcttacggctcaggtggatggaacagagtggtcttggaacaatctcaacacg
ctttgctgggctattggatccatctcgggtgccatgacggaagatgaggagaagaggttc
ttggtcacagtgattaaggatttacttggtctgtgtgagtacaagagggggaaagacaac
aaggctgtggttgcgagtaacatcatgtacgtggtggggcagtatcctcgtttcttgaag
gctcattggaaattcctcaagactgtggtgaacaagctgttcgagttcatgcacgaggtc
catcccggggtgcaggatatggcgtgtgataccttcctaaagattgctaccaagtgcaaa
aggaagtttgttacccttcagacggatgagcgtgtccccttcattgtggagttagttgac
tcgttgcccaccatcattagcgacttggaacctcatcagatacaagccttttacgaggcg
tgtgggtgcatgttgagtgataagggacctgcagtgacggttgaccgtggggacttgatg
aagaagttgatggaactccccaatcgtcaatggaagttgattatggataaggccaacagc
aacgtggagtctcttgtggaacctaacaccatcaaggagatcatcaaaatcctcaaaacg
aacaacaaaatctgtggtaccatcggatcaatctacgctactcagttgcagaccttcttc
atggatttgctcaatgtgtacaaggtatactctgaacgtatctccaccaccattgcgcag
cagggagccgtcgctactcagttgagtctagtccgaacaatgcgtagtgccaaaaaggag
gtcctccggctgctcattgtatttattgagaagagtggtcctcccgaatcggatcctcag
gcagtggccgagggattcattcctcccgtcttggatcctattttgggagattaccagcga
aacattccgaatgcgcgtgatccggaggtgttggttctctttactacggtgattgagaag
ctcaagggtcagattctcagtggggtgcctcgcatcatggaagctgtctttgagtgcacg
ttgcaaatgattactgtcaactttgaggacttccctgagcataggatccgcttctttgag
ttcatccgggcaatcaacactcattgtttccaagcccttttcaacattcctgccgagcat
cagaaactcgtcattgattcagttgtttgggcaatgaagcacactgaacgaaacatttct
gatactggtcttgatattctgtacgatcttctacagaatgtggggaagactcccaacatt
gcacaggggttctaccaacaataccttcttgctctcattcaagacgtctttgctgtcatg
acggatcgtcttcacaagtccgggttcaagatgcacgctaccttattgagacacatgttt
catctcgtccaaatgaaccaagttaccgtacctctatttgacccagccaacgcaccacct
ggtcagacaaaccccgcatttctccgtgaacacatctccaatcttttgattcagagtttc
cccaacttgacgaggagccaggtgtccaagtttgtggatggcatgtttgatctcaacatg
gacttgcctaccttcaagactcatttgcgtgacttcttgattcagctcaaagagttcagt
tcagaggacaatagtggcctatttggagaagagcaagaagagcagcaacgtgaacgaatg
gaagctcaggaagccagccgacgagcagttcccggtttgttgaagccatctgagatcatc
gacgatgatctctga
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