Thalassiosira pseudonana: THAPSDRAFT_268644
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Entry
THAPSDRAFT_268644 CDS
T01078
Name
(RefSeq) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THAPSDRAFT_268644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_268644
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPSDRAFT_268644
Enzymes [BR:
tps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
THAPSDRAFT_268644
Messenger RNA biogenesis [BR:
tps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THAPSDRAFT_268644
Transfer RNA biogenesis [BR:
tps03016
]
Prokaryotic type
tRNA degradation factors
THAPSDRAFT_268644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
KH_KhpA-B
KH_5
Motif
Other DBs
NCBI-GeneID:
7447472
NCBI-ProteinID:
XP_002289681
JGI:
268644
UniProt:
B8C1C5
LinkDB
All DBs
Position
4:complement(570853..573362)
Genome browser
AA seq
721 aa
AA seq
DB search
MTRGDSVLYATASRDKDKRDIDFLPLSVEHQERFSSAGTTSGAFNKRDGRPAEHEILVCR
LIDRPLRPLIAEGWRHETQLLSWILSYDGVRTCDPLAITASAAALWLSDVPLLKPVAAAM
VGYIDGQLVLNPTVEQMKHSRLNLTVAGTKEAVLMIEGAADFLPEDLMVEAVTFGHEAIK
IQCAGLEELGKVAGKAKKYDSIKPPVEGLQEAMDELFTDKVDEIFNGDMAKKDQSAAQSQ
LNEAVMLEFEEKYPEEKAAVKAAFKDLLCRRMFAKAKASGTRIDGRKLNEVRVIDSEAGL
FPRVHGSALFTRGETQVVATATLGDSGMRQKIDRISGMEEKRFYLQYTFPPSCVGETGRV
GAPGRREVGHGNLAERALVPTLPSEADFPYAIRVESLVTESNGSSSMASVCGGCLALMDA
GVPIKSPIAGIAMGMLLGDKGGVSDENAVIVSDILGTEDALGTMDFKVAGNKEGITTFQL
DIKCEGLTLETMKKALDQAKEGRLHILGEMEKALKEPRAELPASVPKMIKVTISPDSIGK
VIGPGGRQIRALIEDFKLDNIDVDESGEIQILGFDMEQMEKAKEMIPTYVGPEPEEGKIY
TGKITGIHNFGVFVEILPGAEDGSTPGLEGLCHVSELHIERVRNTEGFIRAMNTETLEVV
YQGKNKKGQHQLSRKAVLEERRGGGKRSINGAGGANEEQKAEMSKEEIDVIAAAIDGISE
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcggcgattccgtactctacgccaccgcctctcgtgacaaggacaaacgcgac
attgacttcttacccctcagcgtcgaacatcaagagagatttagttccgcgggcactacc
tccggagcattcaataagcgagatggacgtcctgcggaacacgagatattggtttgtcgt
ttgattgataggcctttgaggcctttgattgcggagggatggaggcatgagacgcagttg
ttgagttggattctgagttatgacggagtacgaacgtgtgatcctctcgcgatcactgcg
agtgcggctgctttgtggttgtcggatgtaccgttgttgaaaccggtggctgcggcgatg
gtgggttacattgatgggcagttggtgttgaatccgactgtggagcagatgaagcatagc
cgtttgaacttgactgtggctggtacgaaggaggctgtgttgatgattgagggggcggct
gatttcttgccggaggatctaatggtggaggctgttacgtttgggcatgaggctatcaag
atccagtgtgctggacttgaggaattgggtaaagttgctggaaaggcgaagaagtacgat
tctatcaaaccacctgtggaaggattacaggaggcaatggacgagttgttcactgataag
gttgacgagatattcaatggtgatatggcgaagaaggatcagagtgcagcacagtctcag
ctcaacgaagctgtaatgctggagtttgaggaaaaatacccggaggaaaaggctgccgtc
aaggcggcattcaaagacttactatgtcgtcgcatgtttgccaaggccaaggcctcagga
acacgtattgacggaaggaagctcaatgaggtacgagtgattgattcagaggcaggctta
ttccctcgtgtacacggatcagcactctttacccgtggtgaaactcaggtagttgcaaca
gctacattgggggatagtggaatgagacaaaagattgatcgtatcagtggtatggaggag
aagaggttttacttacagtatactttccctcctagttgcgttggagagacgggacgtgtg
ggtgctcctggaagaagagaggtcggacatggtaacttggcagaacgagcattggtacca
actttaccgtctgaggcagacttcccatacgccatccgtgttgagtcacttgtgacagaa
agtaatggatcatcctcaatggcttcagtttgtggaggttgtcttgcgttgatggatgca
ggagtaccgatcaaatcgcccatcgcaggaattgccatgggcatgcttcttggcgacaag
ggtggtgtttccgatgaaaatgctgtcattgtatctgatattctcgggactgaggatgca
ttaggaacaatggatttcaaggttgctggtaacaaagagggcattacaacattccaactt
gatatcaaatgtgagggccttacacttgagaccatgaaaaaagcacttgatcaggcgaaa
gagggaaggttgcacatcttgggagagatggaaaaggcattgaaagaacctcgtgctgag
cttccagcgtctgttccaaagatgatcaaggttacaatatctccagactctattggaaag
gtgattggacccggtggacgccaaatcagagctcttattgaggacttcaaactcgacaac
attgacgtggatgagtcaggtgagatccagattctaggctttgatatggagcagatggag
aaggcaaaggaaatgattccaacatatgttggtccagagcccgaagagggaaagatttac
acaggaaaaattactggaattcacaactttggtgtgttcgtagagattctgcctggtgca
gaggatggttcaactcctgggttagagggactttgccatgtttctgaactccacattgaa
cgagttagaaacaccgagggctttatcagagccatgaatacggaaacactagaagttgtg
tatcagggcaagaacaagaaagggcaacatcagttgagcagaaaagccgtcttggaagag
agaaggggcggaggaaagagaagtattaacggagcaggcggtgctaacgaagagcagaag
gctgaaatgagcaaggaggagatagatgttattgctgctgctatcgacgggattagtgag
ctataa
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