Thalassiosira pseudonana: THAPSDRAFT_268689
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Entry
THAPSDRAFT_268689 CDS
T01078
Name
(RefSeq) potential RNA bindin g protein
KO
K14787
multiple RNA-binding domain-containing protein 1
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_268689
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
90S particles
Other 90S particles
THAPSDRAFT_268689
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_11
RRM_7
DUF8400
RRM_5
RBD_AKAP-17A
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
7447954
NCBI-ProteinID:
XP_002289789
JGI:
268689
UniProt:
B8BZC4
LinkDB
All DBs
Position
4:complement(1080209..1083123)
Genome browser
AA seq
886 aa
AA seq
DB search
MTTPASTSTPTTTTRVCIKNLPLSFDEGKLKAHLQSSIASLILTDCKLLKTKDGRSRKIA
FVGFKSPEMAQQTVSYFHKSFALTSKLNVSLAFSKKEGPPLTSEYRPWSKHSAGSSRNQK
LQEQQQQQTDEATNSKTQKDTEVDGDELTSTKESDQVRRKREEFLSAMGVSDKHGKDSAV
GKSKFWANDDVVADPIDMIDGSNDAKDESDGSDEDNGNISSSSESDLDAQMMKTSATNEK
NSEGKEVSSDLDFLKSKQVKADILTDEDEDHEVDDEDDGTDSSSSSDSDSSSGENSSEEE
NEVQQEESSAADKGEEKDQANKDQPSITLADRLFVRNLPFTTTEEELFETFSQFGSVAAV
HIPVDDTKRNKGYAFISYQSKHDAKLAIDTMDGEDFQGRLIHILPARPSNEPDADGNNAN
LTYKERQALARQKEAENATQSWSASFLRGDTVVDNISDRLGVSKGDVLNVKDGISSGNAA
VRLALGETHIIAENIAFFEMHGVDVRALESKKSNSSSDKGGGGSASKRSATTILVKNLPY
DTSLEELTKAFHSIGGDAPRRILLPPSKTAALVEYDHATDARRAFRRLAYKKFKHVPLYL
EWAPMMDAVKKKDEAVENGTSDNVQMECNNDHNTVKKDLMDADDHNADADNTQTIYVKNL
NFNTSEDELKRQFTSVGFVPRAVKIPTKAAPMKKQSPADDSETKLVSMGYGFVEFVSEEE
AKKAMKSLQGKLVDGHSLDIKLSNKSLSSSKSSAPTIDKASKNTKIMIRNIPFEATRSEI
LQLFGTFGQLKKVRLPKKFDGTHRGFGFCEFLTRKEAQNAMATLSRTHLYGRHLVLEWAS
NEETVDGKVDVGMVREKAKRNATRGGLGGAGAADAKKVKRQHKKFD
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccccgcatctacatcaacgccaaccacgacgacgcgagtatgcatcaagaac
ctaccgctctccttcgacgaaggcaaacttaaggcacatctacaatctagcatcgcttcg
ttgatactgactgattgcaagttattgaagactaaggatggaagaagtcgtaagattgcc
tttgttggcttcaagagcccggagatggcccagcaaaccgtgtcgtattttcataaaagc
tttgcactaacttccaagttgaatgttagtttggcgttttccaaaaaagaagggcctccg
ctaacatctgagtatcgcccttggtcaaagcacagcgcaggatcgtcgaggaatcaaaag
ctgcaagagcaacaacaacagcagacagatgaagctaccaacagtaagacgcagaaagat
acagaagtagatggcgatgagctgacaagtactaaagagtcagatcaagtacgtcggaaa
agagaggagtttctctcggccatgggagtatcagacaagcatggcaaagatagtgctgta
ggcaagtccaagttttgggcaaacgacgacgtagttgctgatcctatagacatgattgat
ggatctaatgatgcaaaagatgaaagtgatggcagtgatgaagataatggcaatatcagc
agcagttcagaatcagaccttgatgctcaaatgatgaaaacaagcgcaaccaacgaaaag
aacagcgaggggaaggaagtctcatccgatttggactttctcaagtctaagcaagtgaaa
gctgatattctcactgatgaggatgaagatcacgaagtggacgatgaagatgacggtact
gatagttcttcaagtagtgattctgatagcagtagcggggagaatagttcagaagaagag
aacgaagtgcagcaagaagaatcatctgcggcagacaaaggagaagaaaaagatcaagcg
aacaaggaccaacccagcatcacgttggctgatcgtctcttcgtacgcaatcttccattc
acaactacggaggaagaattattcgaaactttctcccaattcggctctgttgccgccgtg
cacattccagttgacgacaccaaacgaaacaaaggatatgccttcatctcttaccaatcc
aaacatgatgccaaacttgccatagatacgatggacggagaagatttccagggaagattg
attcacatcctacctgctagaccttcaaatgagccggatgctgatggaaataatgccaat
ctcacctacaaggaacgtcaagcactagctcgtcagaaagaggcggaaaatgccacgcaa
agttggtctgcaagtttccttcgtggagatacagttgttgacaatatctctgatcgtttg
ggagtatcgaagggcgatgtgctgaacgtcaaggatggtatttcttcaggaaatgcagca
gtgcgattggcattaggagagacgcatatcattgctgagaatattgcattctttgagatg
catggtgttgatgtgagggctttggaatctaagaaaagcaacagtagttcggacaaggga
ggaggtggcagtgcatccaaacgtagcgctaccacgattttggtcaagaatcttccttat
gacacgtcgttggaggagttgacaaaagcgtttcactctattggtggtgatgcacctcga
aggatcttgcttcctccttcgaagactgcggctcttgttgagtacgaccatgcaaccgat
gctcgtcgtgcgtttcgcagattggcttacaagaagtttaaacatgtacctctttatctt
gagtgggcgccaatgatggatgctgtaaagaagaaagatgaagcagtggagaatggtaca
tctgacaacgtgcagatggaatgcaacaatgaccacaacacagtaaaaaaagatttgatg
gatgcagatgatcacaatgcagatgccgacaacacgcaaacgatctacgtgaagaacctg
aactttaacacttccgaggatgagctgaaaagacaattcacttcagttggttttgttcct
cgtgcagtcaagatccctaccaaagctgcaccaatgaagaaacagagccccgcagacgat
agtgaaacgaagcttgtatccatgggctacggattcgtggagtttgtgtcggaggaggaa
gcaaagaaggcaatgaaatctcttcagggaaaacttgtggatggccattcgctggatatc
aagctctccaacaagagtctatcgtcgtcaaagagttctgctccgactatagacaaggct
tccaaaaataccaaaattatgatacgcaacatccccttcgaagcaactcgttcagagata
ctccaattgttcggaacgtttggtcagctgaagaaagtacgtcttccaaagaagtttgat
ggcactcatcgtggatttggtttctgcgaattcttgacgagaaaagaagcccaaaatgcc
atggcaacgttatcaagaacgcacttatacggtaggcatctagtattagagtgggcaagc
aacgaggaaactgtagacggaaaggtggacgttggaatggtgagagagaaggcaaagcga
aatgcaacgagaggtggattgggaggggcaggtgctgctgacgcgaagaaggtcaagcgt
cagcacaaaaagtttgattag
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