KEGG   Thalassiosira pseudonana: THAPSDRAFT_268816
Entry
THAPSDRAFT_268816 CDS       T01078                                 
Symbol
RPB5
Name
(RefSeq) RPB5,-like protein to RNA polymerase i
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tps  Thalassiosira pseudonana
Pathway
tps03020  RNA polymerase
tps03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    THAPSDRAFT_268816 (RPB5)
  09124 Replication and repair
   03420 Nucleotide excision repair
    THAPSDRAFT_268816 (RPB5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_268816 (RPB5)
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_268816 (RPB5)
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     THAPSDRAFT_268816 (RPB5)
  RNA polymerase III system
   RNA polymerase III
     THAPSDRAFT_268816 (RPB5)
  RNA polymerase I system
   RNA polymerase I
     THAPSDRAFT_268816 (RPB5)
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      THAPSDRAFT_268816 (RPB5)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat
Other DBs
NCBI-GeneID: 7447258
NCBI-ProteinID: XP_002290506
JGI: 268816
UniProt: B8C1Q1
LinkDB
Position
5:complement(167153..168415)
AA seq 226 aa
MMEVEQPTEPPTANNTPQTSSSSLTPEASRLFRVYKTVSAMLSKRGYMVSREMREMTPFD
FTQRFGEYPSREGLTILVEKADDETNQLFVFFPEDEKVGVKPIKILTDRMKDENVSNAIL
VLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYR
LRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM
NT seq 681 nt   +upstreamnt  +downstreamnt
atgatggaagtagagcaaccaaccgaaccaccaaccgccaacaacacaccacaaacctcc
tccagctctcttacaccggaggcatcccgcctctttcgcgtctacaaaaccgtatccgcc
atgttatccaaacgaggatacatggtgagtagggagatgagagagatgactccttttgac
tttacgcagaggttcggagagtatccttcgagagaggggttgactattttggtggaaaaa
gccgacgacgaaaccaaccagctctttgtcttttttcccgaagacgaaaaagtaggggtc
aaacccatcaaaatcctcaccgaccgaatgaaggacgaaaatgtctctaatgccattttg
gtattgaggggggacataaccccgtttgcgaaacaggctgttttagagatgagtgacagt
tttaggcttgagcattttaaggaggctgagttgttggttgacatcacggagcatactttg
gtgccagaacacctagtcctctctcaaaatgaaaagcaagaactcctcaaacgataccgc
ctccgtgaaacacaactccctcgcatccagcccaatgatcccgtggcgagatattatggt
atgaagagggggcaggtggtcaagattattcgtcccagtgagacagcggggaggtatgtt
acttataggatttgcatgtaa

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