KEGG   Thalassiosira pseudonana: THAPSDRAFT_268859
Entry
THAPSDRAFT_268859 CDS       T01078                                 
Symbol
GGTB1
Name
(RefSeq) probable beta subunit of type II geranylgeranyl transferase
  KO
K05956  geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60]
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:tps01006]
    THAPSDRAFT_268859 (GGTB1)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tps04131]
    THAPSDRAFT_268859 (GGTB1)
Enzymes [BR:tps01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.60  protein geranylgeranyltransferase type II
     THAPSDRAFT_268859 (GGTB1)
Prenyltransferases [BR:tps01006]
 Protein prenylation
  Rab geranylgeranyltransferase
   THAPSDRAFT_268859 (GGTB1)
Membrane trafficking [BR:tps04131]
 Exocytosis
  Small GTPases and associated proteins
   Rab associated proteins
    THAPSDRAFT_268859 (GGTB1)
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
    THAPSDRAFT_268859 (GGTB1)
SSDB
Motif
Pfam: Prenyltrans SQHop_cyclase_C
Other DBs
NCBI-GeneID: 7449719
NCBI-ProteinID: XP_002290587
JGI: 268859
UniProt: B8C277
LinkDB
Position
5:complement(572750..574126)
AA seq 392 aa
MATSNNTDPPIGHFYDALHANYIAALGDKLDNPSSYEGAVTEHLRVSGVYWSLAALSLLR
DSEEVDQSAIVDWVFACYDSRTGGFGGNCSGGVDAPCPHDGHLLYTLSALQILAMADCMD
DERLNKEAIVKFVAGLQNEDGSFSGDEWGEVDTRFSYCALSCLALLGKLPDNKRPIIDIY
KAVQYIISCRNFDGGFGSVPGAESHAGQVFCCIGALSIAHSLHLLNDGIDKSSSSGGADL
LSWWLAERQCDSGGLNGRPEKQADVCYSWWILSALSIMGRVNWINTSKLGQFILHCQDDD
DGGIADRPTDMPDVYHTFFGLCGLSLIGHLGKIGNREGKLYREVDPVFALPLDVVKKLGL
RAQVISGCRGEVEERLLIHSILDGSIKQTNSE
NT seq 1179 nt   +upstreamnt  +downstreamnt
atggcgacctccaacaacacagacccacccatcggccacttctacgatgcccttcacgca
aactacattgccgccctaggtgacaaactcgacaacccctcctcctacgaaggagccgtc
accgagcatctacgcgtgagcggtgtgtactggagcctcgctgcgttgtcgttgctacgt
gattctgaggaggtggatcaatcggcgattgtggattgggtgtttgcgtgttatgactcg
cgaacgggcggattcggtggtaattgttcaggtggcgtagatgcaccgtgtccacacgat
ggacatctcttgtacactctgtcagcgttgcaaatacttgccatggcagactgtatggac
gatgaaagattaaacaaagaagccattgtaaagttcgttgctggattacagaatgaagat
gggagttttagcggtgatgagtggggagaggtggacacacgttttagttactgtgccctt
tcatgtttggccttgctcgggaaacttcccgacaacaaacgaccaattatcgatatctac
aaagcggtccaatatatcatatcatgccgaaactttgatggaggatttggatcggtacca
ggtgcggaatctcacgctgggcaggtcttttgttgcatcggagctttgtcgattgcacac
tctcttcacttactaaatgatggaattgataagtctagttcgagtggcggtgcagatctt
ctatcatggtggttagcagaacgacaatgcgatagtggaggtctgaatggacgtccagag
aagcaggctgatgtgtgctacagttggtggatcttatctgccttatcaataatggggaga
gtcaattggattaacacttccaaactagggcagtttatattgcattgccaagacgacgat
gatggaggtattgccgatagaccgactgatatgcccgacgtgtatcacacattctttggc
ttgtgtgggctctctttgattggtcacttgggtaagattggaaacagagagggaaagtta
tatcgtgaagttgatccagtatttgcattgcccttggatgttgtcaagaagctaggtctg
agagcgcaagttatcagtggatgcagaggcgaagttgaagagcgattactgatacattct
atcctcgacggatccatcaaacaaaccaacagtgagtaa

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