Thalassiosira pseudonana: THAPSDRAFT_269064
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Entry
THAPSDRAFT_269064 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K14301
nuclear pore complex protein Nup107
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_269064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_269064
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_269064
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
THAPSDRAFT_269064
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
THAPSDRAFT_269064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
7443612
NCBI-ProteinID:
XP_002291435
JGI:
269064
UniProt:
B8C5P5
LinkDB
All DBs
Position
6:complement(831511..834115)
Genome browser
AA seq
739 aa
AA seq
DB search
MSNPEEMVESSPAEVLAACLGSVEDTVDSLPLQRLNAALGWIQACHARKWEDRVSKNYEG
GEDPILPPPRRRTMWPATAEAAKRSGGKEKIMHPDAPLLTRSGEGAQRSLSPASVTLAPD
DEMDDARLLRACFMLIQAGRIEEALKLTDDCGQPWRAVGWIGGTPLSSDGTGNPTRALWK
SNGRKIAEKMTQITHRDMMDSASRTLFPSIAYEAAIMSLLSNRVDCALANPVFQSWEDGV
HAILSAERGIIEDDVLKSHNLARIEAFEGDDENGPLGSGGDLGDALQKLETATTNRVRVE
GEDPFRGGMISFLVGSNALKEYIEECAFASLGAGNEDEAFFLRFITHLILYVDTALPGFS
FQLALPAEVLLLLKYTDYLASRRELWSHVAVYTSLLSPENIIDVYSSFLVHVHSDQERQM
TLQQARQLFPKGLDYYVLRSVVREMIMSDDDENWQREAGEDLPPAGVSPKDARMMRSVFW
LCYYPEHRPDALVCANMLLRKFLHASCESDSVDGNNLHTPKVFIRILPKNLVTSAIEQCH
ENDDNIAAEFESIKKFLEAHNRHVQFLDVISKTAPCHKSGNKPAHSLQDNFESEIADKME
RNAFRQRKVGLCKIIIESAQRVSDALMEVLTFGGGWLVDSNADDLDDRTMTVEAEARAEE
MKDIRSTFAPLAVAMLYDALDTTGMWMEQALSLASIVAYDGHRLHETFNDYDMDKFLGSI
AESHLKLNRCSNSRTFFEC
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatccagaggaaatggtggagagttcgcctgcggaggtgttggctgcgtgtctg
gggagtgtggaggataccgtcgattcactcccgttacaaaggttgaatgcggcactgggg
tggattcaagcatgccatgctcgtaaatgggaggatagggtgtccaagaattacgagggt
ggagaggaccccatcttaccccctccgagacgtcgtaccatgtggcctgcaactgccgag
gctgcgaaacgtagcggtggtaaggaaaagattatgcatccggatgctcctcttttgacc
aggtcgggagaaggagcacaacgctctttatctccggcttctgtgacattggcacccgat
gatgagatggacgatgcaaggttgcttcgtgcttgtttcatgctgattcaagcgggacgt
atcgaagaggcattgaagttgacagatgactgcggacagccttggagggcagtgggatgg
ataggaggaactccactctcgtcggatggaacggggaatcctacccgtgccttgtggaag
agcaatggacgcaagattgctgaaaagatgactcaaattactcatcgcgacatgatggat
tcagcgtcacgtacgttgtttccctccattgcgtatgaggcagcaatcatgtcactactc
tccaaccgtgtggactgtgcattggccaacccagtcttccaatcttgggaggatggagtg
cacgccattctatctgctgaacgggggatcattgaggatgatgtgttgaagtcacataat
cttgctaggattgaagcatttgaaggggacgacgagaatggtcccttgggaagtgggggg
gatctcggggatgctcttcaaaagttggagactgcaactacgaatcgtgttcgtgtggag
ggtgaagatccgtttcgtggtggaatgatttcatttttggtgggaagtaatgcgttgaag
gaatatatcgaagagtgtgctttcgcttctcttggtgcagggaacgaggacgaagcattc
ttcttgaggttcattacgcacctgattctctacgttgacaccgcacttcctggttttagc
tttcaattggctctacctgcggaggttctgttgcttctcaagtacacagactacttggcg
tcgaggcgagaactgtggtcgcatgtggcggtgtacacctctctactttcgcctgagaac
attattgatgtgtactccagctttctagttcatgtgcacagcgaccaagagcgtcaaatg
acacttcaacaggctcgtcaattgtttccaaaagggttggactattatgttctccgtagt
gtcgtgcgtgaaatgatcatgagcgacgacgatgagaactggcaacgtgaggcaggtgag
gatcttccaccagctggagtgtctccaaaggatgcgcgaatgatgaggtccgtcttttgg
ctctgttactatcctgagcacaggccagacgctcttgtttgtgccaacatgcttctccga
aagtttctgcatgcatcttgtgagagtgacagtgttgacggcaacaatctccatactccc
aaggtcttcatccgtattcttccaaagaatctcgtcacgtcggctattgagcaatgccac
gagaacgacgacaatatcgcagcagagtttgaatctatcaagaagttccttgaggcacac
aatagacatgtgcagttccttgatgtgatttccaagaccgcgccctgccacaagtcaggc
aacaaaccagcgcatagcttacaagacaactttgagtcggagattgccgataaaatggag
aggaatgcattccgtcaacgaaaggtagggctatgtaagatcattattgagtctgctcaa
cgagtatctgacgctttgatggaagtgcttacgtttggaggaggatggcttgttgatagc
aacgcagacgatttggacgatagaacaatgacggttgaggcagaggcacgggcagaggag
atgaaagatattcgttcaactttcgcacctttggctgtcgccatgctttacgatgctttg
gataccactggtatgtggatggaacaggctttatcgctggcaagtattgttgcctacgat
ggacatcgtctgcacgaaactttcaatgattatgacatggacaagttcttgggcagcatt
gcagagtctcatctcaagttgaatcgttgctctaacagccgaacgttctttgaatgctga
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