Thalassiosira pseudonana: THAPSDRAFT_269123
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Entry
THAPSDRAFT_269123 CDS
T01078
Name
(RefSeq) cdc21-like protein
KO
K02212
DNA replication licensing factor MCM4 [EC:
5.6.2.3
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THAPSDRAFT_269123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_269123
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
THAPSDRAFT_269123
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Initiation Factors
pre-RC (pre-replication complex)
THAPSDRAFT_269123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCM
MCM_OB
MCM_lid
Mg_chelatase
AAA_5
AAA_3
MCM4_WHD
HTH_Crp_2
AAA_16
Zn_ribbon_8
Motif
Other DBs
NCBI-GeneID:
7446002
NCBI-ProteinID:
XP_002291125
JGI:
269123
UniProt:
B8C649
LinkDB
All DBs
Position
6:1224591..1227813
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AA seq
634 aa
AA seq
DB search
MDILLGRELESLQVLPRVQVRPFHLRNLSHMRSLDPNAIDTLLSIRGMVVRTSPVIPDLK
VAFFQCSICGQTDQVTIDRGRIAEPTQCPTCHVRHGYSLIHNRCYFSDKQMVRVQETPDE
VPAGETPASIVVFAYDDLVDAVRPGDRVEVTGVFRAQARRVNPKITKVKSVYKTYVDAIH
FRKVVAQGGSSVRGDEVTHGSRFSPQRIEELEALSQTPDVYDRLVNALAPSIWEMDDVKK
GVLCMLFGGNSRKEGTVKLNKRGDINILLVGDPGTSKSQLLGYVHKLSPRGVYTSGKGSS
AVGLTASVVRDPETRELVMESGALVLSDLGICCIDEFDKMSGTTRAILHEAMEQQTVSIA
KAGIIATLNARTSILASANPVESRYNPSLSVVENIQLPPTLLSRFDLIYLILDAPNVTND
RQLAQHLVGLYYETPDVVQPPLDHSLLRDYIAYARENIHPELSDLASRELIAAYIDMRRG
GSGGSGGRGRTISATPRQLESLIRLSESMARMRYSRVVTRSDVREAVRLMKVATQAAATD
PRTGRIDMDMITTGRSTAERELEENLGASLKELLVERRGNRLSVSQIRNQLSEILNVTVQ
QDDLIEILKVMEADGLVQFNERAQTVFVRAGVVG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggatatattgctgggaagggagttggaatcactccaggttttgccacgggtgcaagtc
cgtccgttccatttgaggaatttgtcgcacatgcgttcattagaccctaatgctattgat
acattgctttccattcgggggatggtggtgaggacttctccagtcattccggatttgaag
gtggcattctttcagtgtagcatttgcggacagacggatcaggttaccattgatagggga
aggattgcagaaccaactcagtgccctacgtgtcatgttcgacatgggtattcgttgatt
cacaaccgttgttacttcagcgataagcaaatggtgcgagtgcaggagactcccgatgaa
gtaccagctggagagacaccagcctctattgtggtgtttgcctatgatgacttggtggat
gcagtacgtcctggagatcgtgtggaggtgacgggtgtgttccgtgctcaagctcgcagg
gtgaacccaaagattacaaaagtgaagagtgtttacaagacgtatgtggatgccattcac
tttcgcaaagtggtggctcagggaggttcgtcggtgcgtggagatgaagttactcatgga
tctaggttctctccacagaggattgaagagttggaagcactctcacaaacgccggatgtt
tatgatcgtctggtcaatgctttggcaccgtctatttgggagatggacgacgttaagaag
ggagtattatgcatgttgtttggaggcaactcacgaaaggagggcacagtaaagttgaac
aagcgcggtgatatcaacatccttcttgttggggatcctggaacaagtaagagtcagttg
cttggctatgtgcacaagctctccccaaggggagtgtacacttctggaaagggctcttct
gccgttggtcttactgcgtcggtggtacgtgatcccgagactcgtgagcttgtgatggag
tctggagcgttggtgttgtcagatcttggtatctgctgtattgatgagtttgacaaaatg
tccggaacgacccgggccattcttcatgaggcaatggaacaacagacagtgagtattgct
aaggctggtatcattgcaactcttaatgcaagaacctccatccttgcttcggccaaccct
gttgagtctcggtacaatccatcattgagtgttgtggagaacatacagcttcctcctaca
ctgctaagtcgttttgacttgatctacctcatcctggatgctccaaacgttaccaatgat
cgtcagcttgcacaacatcttgtgggtctctactatgaaacacccgatgtcgttcaacct
ccattggatcactctcttttgcgtgattacattgcttacgctcgtgagaatatccatcct
gagttgagtgatctcgcgagccgtgagctcattgctgcatacattgatatgagacgtgga
ggaagcggtggcagtggaggaagaggacgcaccatctctgctactcctcgtcagcttgag
tctcttatccgtctatcagaatcaatggcgcgtatgaggtacagtcgtgttgtgactcga
tcggacgtaagggaagcagttcgtttgatgaaagtggcaacacaggcagcagcaacggat
ccaaggactgggcgtatcgacatggatatgattacaaccggacgaagtactgccgagagg
gagttggaggagaacttgggtgcaagtttgaaggagctgctcgtggaacgacgaggtaat
cgcttgagtgtcagccaaatccgaaaccagctctctgagattctcaatgttactgtccag
caagacgatcttattgagattttgaaggtcatggaggcagatggattggttcagttcaat
gagagagcacagactgtcttcgtgagagctggtgttgttgggtaa
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