Thalassiosira pseudonana: THAPSDRAFT_269328
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Entry
THAPSDRAFT_269328 CDS
T01078
Symbol
PCB1
Name
(RefSeq) beta subunit acetyl/propionyl-CoA carboxylase
KO
K01969
3-methylcrotonyl-CoA carboxylase beta subunit [EC:
6.4.1.4
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00280
Valine, leucine and isoleucine degradation
tps01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09100 Metabolism
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
THAPSDRAFT_269328 (PCB1)
Enzymes [BR:
tps01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.4 methylcrotonoyl-CoA carboxylase
THAPSDRAFT_269328 (PCB1)
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Gene cluster
GFIT
Motif
Pfam:
Carboxyl_trans
ACCA
MdcE
Motif
Other DBs
NCBI-GeneID:
7443455
NCBI-ProteinID:
XP_002291711
JGI:
269328
UniProt:
B8C6F4
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All DBs
Position
8:142267..144032
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AA seq
498 aa
AA seq
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MLPRERIAKIVDRGSAFLEIGALAGGNGLYASDGIEDLPSGGVVAGIGIVHGREVMIVAN
DATVKGGTYFPITVKKHLRAQQIAKENRLPCIYLVDSGGAYLPKQAEVFPDKEHFGRIFF
NQARMSAVGIPQLAVVLGSCTAGGAYVPAMSDESVIVHKNGTIFLAGPPLVKAATQEVVS
AEELGGADVHCSISGVADHFAQDEPSALAKIRQVVGALPSDPMMKTSVPKNTSSFVEEPL
YPLSDLLSIVPEDNRIPFDVRQILARVLDGSRFHEFKERFAKSMVCGFGRIHGLPVGIVA
NNGILFSESSHKATQFIQLCGQRNVPILFLQNITGFMVGKDAENRGIAKDGAKLVTAVSC
VDVPKITLIVGGSHGAGNYGMCGRAYDPRFLFTWPNSRISVMGGPQAARVLSTVKNDQIE
KETGKGMISEEISEFEKPLMEKYEEEGSPYFATARLWDDGVIQVEDTRKVLGQALRIVSK
DLEDDSPKKGSTYGVFRM
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctcgtgaacgtattgccaagattgttgatcgaggcagtgcgttcttggagatt
ggagcactcgctggaggcaatgggttgtatgcatcagatggtattgaagatctgccgtct
gggggtgtagtggctggtattggaattgtccatggtcgcgaggtcatgatcgttgcgaat
gatgccacagtgaaaggtggaacctactttccaatcacagtcaagaaacacctacgagca
cagcaaattgcaaaggagaaccggttgccttgcatttacttggttgatagtggaggagct
taccttccaaagcaagctgaagtatttcctgataaagaacacttcgggcgtatcttcttc
aatcaggcccgtatgagtgcagttggtatccctcaacttgcagttgtgctgggatcgtgt
acggcgggaggtgcatatgtccctgcaatgtccgatgagagtgtgatcgtgcataagaat
ggaacaatcttcttggctggacctcctctggtgaaggcagctacacaagaagttgtgtct
gccgaagaattgggtggtgccgacgtacactgtagcatctccggtgttgctgaccacttt
gctcaagacgaaccgagtgcattggcaaaaatacgacaagtcgttggagcacttccttcg
gatccaatgatgaagacttctgtgccaaagaacacaagcagcttcgtggaggaacccttg
tatccgttgtctgacttactctcgattgttccagaggacaaccgtattccgtttgatgtt
aggcagatcttggctagagtacttgatggtagtcggttccatgaattcaaggaacggttc
gctaaaagcatggtgtgtggcttcggtcgaatacacggtcttcctgtcggaatcgttgca
aacaatggaatcctcttcagcgagtcttcgcacaaggcaacgcagttcattcagctatgc
ggtcaacggaacgtaccaatcctcttcttacaaaacattacaggtttcatggtaggaaaa
gatgctgagaacagaggaatcgcgaaagacggagccaaactcgtcacggctgtaagctgt
gtcgacgtccccaagattacactcatcgtcggaggaagtcatggagcaggaaactatgga
atgtgtggaagagcatacgatcctcgattcctcttcacgtggccaaacagtcgtatctca
gtgatgggagggccgcaggcggcaagagtgctgtctacggtgaagaatgatcagattgaa
aaggaaactggtaagggtatgatatctgaggagatttcagagtttgagaagccattgatg
gagaagtacgaagaggaaggttctccttactttgcgaccgcgaggctttgggatgatggg
gtgattcaggtggaggacacgagaaaagttcttggacaagcactgcggattgtatcaaag
gacttggaggatgacagtccgaagaaaggaagcacgtatggtgtgttccgaatgtag
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