KEGG   Thalassiosira pseudonana: THAPSDRAFT_269352
Entry
THAPSDRAFT_269352 CDS       T01078                                 
Name
(RefSeq) hypothetical protein
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tps03009]
    THAPSDRAFT_269352
   04121 Ubiquitin system [BR:tps04121]
    THAPSDRAFT_269352
Ribosome biogenesis [BR:tps03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    THAPSDRAFT_269352
Ubiquitin system [BR:tps04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     THAPSDRAFT_269352
SSDB
Motif
Pfam: WD40_Prp19 Sof1 WD40 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 EIF3I Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_IFT122_1st eIF2A WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st MIOS_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 7450168
NCBI-ProteinID: XP_002292025
JGI: 269352
UniProt: B8C6X0
LinkDB
Position
8:complement(584427..586021)
AA seq 456 aa
MKVKALSRPQSTTTRSTPTDLRPTHKNLNPSSHPLPRAREYTRAVTAAKLDRMFASPFVG
ELRGGHVDAVNVLSTSRTNLLPVVSGGIDGSVRIWDLQNRKMVKSLEAHGRCVSGVVFGN
GIEGLFYSCGEDGVVKGWFPAGRGNANSSLSFTSIDHHWSDSQFATSSSDAAVHLWDPER
STPITSFTNLWGSDDTVTTIRYNPAERSLLAHCSNDRGIGLHDTRASSALQKSILSMKSN
SLEWNPMEPYMFVVGNEDYNAYTFDMRKLNRPTQMFKGHVAAVMSVSWSPTGTEFVTGSY
DKTMRIFNVRKEGGTASHTGTNATGVARDIYHTKRMQRIFCTAYTLDHKFILSGSDDTNI
RLWKARSSEKMGQLSAREESSLQYRQALVQKYVHLPEVKKIAKARRVPKFIKKQTEMERV
QKEKRRRKEGNVVKHSKPGTKGFTDDKGKSVVKTVD
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgaaggtgaaagctctctctcgccctcaatcaaccaccactcgctccacccccaccgac
ctccgcccaacccacaaaaacctaaacccctcctcccaccccctcccccgtgcacgcgaa
tacacacgcgccgtgacggccgccaaactagacagaatgtttgcttccccctttgtaggc
gaattgcgcggaggacacgtcgatgccgtgaatgtgttgagtacatcacggacgaatttg
ttaccggttgtgagcggggggattgatggctcggtgaggatatgggatttgcagaataga
aagatggtcaagagtttggaggctcatgggaggtgtgtgagtggtgtggtgtttgggaat
gggattgaggggttgttttatagttgtggggaggacggggtcgtgaagggatggttccca
gctggacgaggaaacgccaacagctccctttcattcacatccatcgatcatcattggtca
gactctcaattcgccacatcctcctctgatgcagcagttcacctatgggatccagaacga
tctacaccaatcacatcattcacaaatctatgggggagcgatgatacagtcacgactata
cgatacaatccagcagaacgatctttgctcgcacattgttctaatgatcgtggtatcgga
ttgcatgatacacgtgcatcgtcggcgttgcaaaagtctatattgtcaatgaagtctaat
tcgttggagtggaatccgatggagccatatatgtttgttgtgggaaatgaagattacaat
gcttacacgtttgacatgagaaagttgaatcgacctacgcagatgttcaaggggcatgtt
gctgcagtaatgagcgtcagttggagtcctacgggtacagaatttgttacaggaagctat
gacaaaacaatgaggatatttaacgtgaggaaggaaggaggcactgcctctcacactgga
acaaatgccactggagtagcacgtgacatctaccacaccaaaagaatgcagcgcatcttc
tgcacggcgtacactctcgatcacaaattcatactttctggatcagacgataccaacatt
cgcttatggaaggcacgttcttccgaaaagatggggcaattatcagcacgagaggagtct
tctcttcaatacagacaggcattggtgcaaaagtatgttcatttgccggaggttaaaaag
attgccaaggcgaggcgtgtgcccaagtttattaagaagcagactgagatggagagggtg
cagaaggagaagaggaggaggaaggagggtaatgttgtcaagcattcgaagccggggact
aagggctttacggatgataaaggaaagagtgtagtcaagactgtggattga

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