Thalassiosira pseudonana: THAPSDRAFT_269352
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Entry
THAPSDRAFT_269352 CDS
T01078
Name
(RefSeq) hypothetical protein
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_269352
04121 Ubiquitin system [BR:
tps04121
]
THAPSDRAFT_269352
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
90S particles
Other 90S particles
THAPSDRAFT_269352
Ubiquitin system [BR:
tps04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
THAPSDRAFT_269352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Sof1
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
eIF2A
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
MIOS_WD40
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
7450168
NCBI-ProteinID:
XP_002292025
JGI:
269352
UniProt:
B8C6X0
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All DBs
Position
8:complement(584427..586021)
Genome browser
AA seq
456 aa
AA seq
DB search
MKVKALSRPQSTTTRSTPTDLRPTHKNLNPSSHPLPRAREYTRAVTAAKLDRMFASPFVG
ELRGGHVDAVNVLSTSRTNLLPVVSGGIDGSVRIWDLQNRKMVKSLEAHGRCVSGVVFGN
GIEGLFYSCGEDGVVKGWFPAGRGNANSSLSFTSIDHHWSDSQFATSSSDAAVHLWDPER
STPITSFTNLWGSDDTVTTIRYNPAERSLLAHCSNDRGIGLHDTRASSALQKSILSMKSN
SLEWNPMEPYMFVVGNEDYNAYTFDMRKLNRPTQMFKGHVAAVMSVSWSPTGTEFVTGSY
DKTMRIFNVRKEGGTASHTGTNATGVARDIYHTKRMQRIFCTAYTLDHKFILSGSDDTNI
RLWKARSSEKMGQLSAREESSLQYRQALVQKYVHLPEVKKIAKARRVPKFIKKQTEMERV
QKEKRRRKEGNVVKHSKPGTKGFTDDKGKSVVKTVD
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaaagctctctctcgccctcaatcaaccaccactcgctccacccccaccgac
ctccgcccaacccacaaaaacctaaacccctcctcccaccccctcccccgtgcacgcgaa
tacacacgcgccgtgacggccgccaaactagacagaatgtttgcttccccctttgtaggc
gaattgcgcggaggacacgtcgatgccgtgaatgtgttgagtacatcacggacgaatttg
ttaccggttgtgagcggggggattgatggctcggtgaggatatgggatttgcagaataga
aagatggtcaagagtttggaggctcatgggaggtgtgtgagtggtgtggtgtttgggaat
gggattgaggggttgttttatagttgtggggaggacggggtcgtgaagggatggttccca
gctggacgaggaaacgccaacagctccctttcattcacatccatcgatcatcattggtca
gactctcaattcgccacatcctcctctgatgcagcagttcacctatgggatccagaacga
tctacaccaatcacatcattcacaaatctatgggggagcgatgatacagtcacgactata
cgatacaatccagcagaacgatctttgctcgcacattgttctaatgatcgtggtatcgga
ttgcatgatacacgtgcatcgtcggcgttgcaaaagtctatattgtcaatgaagtctaat
tcgttggagtggaatccgatggagccatatatgtttgttgtgggaaatgaagattacaat
gcttacacgtttgacatgagaaagttgaatcgacctacgcagatgttcaaggggcatgtt
gctgcagtaatgagcgtcagttggagtcctacgggtacagaatttgttacaggaagctat
gacaaaacaatgaggatatttaacgtgaggaaggaaggaggcactgcctctcacactgga
acaaatgccactggagtagcacgtgacatctaccacaccaaaagaatgcagcgcatcttc
tgcacggcgtacactctcgatcacaaattcatactttctggatcagacgataccaacatt
cgcttatggaaggcacgttcttccgaaaagatggggcaattatcagcacgagaggagtct
tctcttcaatacagacaggcattggtgcaaaagtatgttcatttgccggaggttaaaaag
attgccaaggcgaggcgtgtgcccaagtttattaagaagcagactgagatggagagggtg
cagaaggagaagaggaggaggaaggagggtaatgttgtcaagcattcgaagccggggact
aagggctttacggatgataaaggaaagagtgtagtcaagactgtggattga
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