Thalassiosira pseudonana: THAPSDRAFT_269534
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Entry
THAPSDRAFT_269534 CDS
T01078
Symbol
SUPT6H
Name
(RefSeq) SUPT6H,-like protein to suppressor of ty 6
KO
K11292
transcription elongation factor SPT6
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_269534 (SUPT6H)
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_269534 (SUPT6H)
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
THAPSDRAFT_269534 (SUPT6H)
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
THAPSDRAFT_269534 (SUPT6H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
Tex_central_region
S1
Tex_YqgF
HHH_3
Spt6_S1
Motif
Other DBs
NCBI-GeneID:
7449336
NCBI-ProteinID:
XP_002292733
JGI:
269534
UniProt:
B8C8T3
LinkDB
All DBs
Position
10:979411..985475
Genome browser
AA seq
1304 aa
AA seq
DB search
MDGGANDDDEDPFDEDYMDEREGGMRRKSKKFRERGVGLRRAFEPVQLVENFCTEKDDAI
RMADCPERYYDWRSLPVVGEEIGFEEEEEAMWIMGKIPAIQSEYYAISATNLENPSAMDS
DEVEKKERVILESIVNSLRYMRAEKLEPDFIKRYRMDYVTSPAVRDNLYRIMDEDSEWER
MTEARTKIETILNGFADEVKGQQDTGSGEDHLLRLKEELRIAQEKLDETVKDEERVTVEL
GELDNAKGGAGVKEEEDDDDELFGDDDEDDSVNKDKVKRSRRFDWDYYRTCVGEGLRGIC
YKFVLPPFRVGIKLEETLTKSTGFTYDRLVLLSSAREDAAWDDNPEMMDPLRGCRYVAAM
ELAHEPRIRRHLRDIYRAEACITTRPTAKGLQNIDAFHEYYGLHLLRNKHVKDHFPTACI
QYLNLLKAERSGDITVQVHLPFVNDEMDTGTPWLMEALERVYMPANGDTEEWNDERRKIL
KMALVNYLLPHFEAETRRDLRDASTRIGVEAAAQNLQALAMEGPYRPSYMLGENRFIVPT
DDFPIVGVCSATDPKDGTFLAAIDENGESQDHLAIPGGTSITSDNAREKVITFLMQTRPS
LVVVDDEDFEARMDSFRMMHPNVDDDDDVVWKCNVDIVDDNVAQLFGRSVRGKKEFPDQP
VNLKVAIATARWAKNPLCELAYTWSTASDAGVFGTEMLFMNIHPLQRLLPKPLLLRQYER
VLCNVTAEVGVDINGACTYDHMHGMLSFVPGLGPRKANNLKQSVARIGGVVSSRKSLLAK
RLLGPIIYNNAIAFLRVRSTDQLQDQMLHPLDDTRCHPDVYLRQKWAVKIAVDALELGDS
ASNDTDDYAISALRDVMQNSREEVEELDLDTFAEMIEQNGNGKWLSHLTMVKWEFRLPFE
DPRKPMEPPTHEKLFKLLTGETDATLCPGKEVTGKVVKNGDFGSQVKLEGDVPGFIPLRN
LADDHVGQIVNAIITEVKMDHMCCDLTLKLEDFKKKSSEWGRPASLPPLDNSFDREAALS
IDADKAKAREEPPRSGKVTRRACAHPAFRNASHSEVDKELREAGDAMVGEALIRPSNKSV
DSLAVHWMVRPGCIKVIEVLEEDKDTDASIGNRLIIKREVYESIDELLGRYIAPMNDRVE
EVIHHRKFMDKLEDEVDAKIVEMKQAQPKGVFYHVCWSESYPGYVSLRFIMNRTPRNHTI
GITPDGFAWGSMNFNSMDRLLNAFKKNPGGPGSRQPDRSLGGSTSGGSVSTSRQSTGMRT
EDTSRQSRWGAPPPPTLPPPSRWGMPPPAGPPPSFAAPPPHSYQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggatggaggggccaacgacgacgacgaggatccatttgatgaggattacatggatgag
agggaagggggaatgcgcagaaagagcaagaaatttagggagcgcggggtaggcttgaga
agggcgtttgagccagtccagctcgtggagaacttttgtacagagaaggatgatgctatt
cgtatggcggattgtccggagagatactatgattggaggtctctgcctgtggtgggggaa
gagattgggtttgaagaagaggaagaggcaatgtggatcatgggaaagattcctgctatt
cagtctgagtattatgccatttctgccactaatctggagaatccttctgccatggacagt
gacgaggttgaaaagaaggaacgggttattcttgaatccattgtcaattccttgcggtac
atgcgcgcggagaagttggaacctgacttcatcaaacgttatcgcatggattacgttact
tcccccgcagtgcgagacaatctctacagaatcatggatgaggattctgaatgggagcga
atgacggaggcacgtaccaagattgagaccattttaaatggctttgctgatgaggtaaag
ggtcagcaggatacgggatcgggggaggatcatttgttgaggctcaaggaggagttgagg
atcgctcaggaaaagttggatgagaccgtcaaggatgaggagcgtgtgactgttgagttg
ggggagttggataatgccaagggtggagccggggtgaaggaggaagaggacgacgacgat
gagttgtttggagacgacgacgaggatgattcagtgaataaggacaaagtgaaacgaagc
aggagatttgactgggattactaccgaacatgtgtcggggagggactgcgtggtatctgc
tacaagtttgttctccctcctttccgtgtggggatcaaactcgaagagacactcacaaaa
tctactggattcacctatgatcgtttggttttgctatcctcagcacgcgaggatgctgct
tgggatgacaatccagaaatgatggatcctctccgcggatgtcgctatgttgctgccatg
gaattggctcacgaaccacgtatccgccgtcatttgagagatatctatcgtgcagaagct
tgcatcacaacgcgtcccactgccaagggtcttcagaacattgatgcgttccatgaatac
tacggtctccacctgttgcgtaacaaacatgtcaaagaccatttcccaacggcctgcatc
caatacctcaacttgctaaaggccgagagaagtggtgatattactgtgcaggtgcacttg
ccatttgtgaatgacgaaatggacactggcacaccttggctcatggaggctttggagcgc
gtgtacatgcctgccaacggagatacggaggagtggaatgacgagcgacgcaagattctg
aaaatggcattggtcaattaccttttgcctcattttgaggctgagacacgtcgtgatttg
agagatgcatcgaccagaatcggtgtcgaggctgctgctcagaatctgcaggctttggcg
atggagggtccctaccgtccatcttatatgctcggtgaaaatcgtttcatcgtcccgacg
gacgactttccaatcgttggagtttgttcagccaccgatccaaaagatggaacgttcctt
gcagctattgatgagaacggcgagtcgcaagaccacttggcaattccaggagggacgagc
atcacttcggataatgcccgagagaaggtgataactttcctgatgcaaactcgtccttcc
ttggttgttgttgatgacgaggatttcgaggcgcgaatggactccttccgtatgatgcat
ccaaatgttgatgacgatgacgacgttgtgtggaaatgcaatgtggatatcgtggacgat
aatgtggctcagctctttggtagaagtgtgcgtggaaagaaggagttccccgaccaaccc
gtcaacctcaaagtcgcaattgctaccgcaagatgggcgaagaatcctctttgcgagtta
gcgtacacttggagtaccgcaagtgatgcaggtgtgttcggcacggagatgctcttcatg
aacattcatcctctccaacggctccttcccaagccattgcttttgcggcaatacgagcgt
gtcctttgcaacgtcactgccgaagtcggggttgacataaatggtgcttgcacgtacgat
cacatgcatggcatgctctcgtttgttccaggacttggacctcgtaaagccaacaatctc
aagcaaagtgttgcccgcattggtggtgtcgtttccagcagaaaatcactcttggcgaaa
agactcttgggaccaattatctacaacaacgccattgcattcctccgagtacgatcgact
gatcagttgcaagatcaaatgctccaccccttggacgatactcgttgtcatcctgacgtg
tatcttcgtcaaaagtgggcagtcaagattgctgtggacgcccttgaattaggggatagt
gcatctaacgataccgatgattacgccatctctgcattgcgtgatgtcatgcagaactcg
agggaggaggtggaggagcttgatttggacacgtttgccgagatgattgagcagaatggc
aacgggaagtggctgtcacacttgactatggtgaaatgggaatttcgtcttccgtttgag
gatccaaggaagccaatggaaccaccaacccacgagaagctctttaagcttctcaccggc
gaaactgatgctacgctttgtcctggcaaggaagtcacgggcaaggttgtcaagaatggg
gactttggatctcaagtcaagcttgaaggtgacgttcctgggttcattcctctcagaaac
ttggccgacgatcacgtcggccaaatcgtcaatgcaatcataacggaagtgaagatggat
cacatgtgctgtgatcttactttgaagttggaagactttaagaagaagtcaagtgaatgg
ggcagacctgcgagtcttccacctctagacaatagttttgacagagaggcggcactgagt
attgatgcagataaggcaaaggcacgggaggaacctcctcgctctggcaaggtcacgagg
cgcgcttgtgcacacccagccttccgcaatgccagtcacagcgaagtggataaggaactg
agagaggctggtgatgccatggtaggcgaagctctcattcgtcccagcaacaagtccgtc
gattcattagcagtgcattggatggtcaggcctggctgcatcaaagtgatcgaagtcttg
gaggaagacaaggataccgatgctagcattggtaaccgtctcatcatcaagagggaagtc
tatgagagtattgatgagttgctgggtcgatacatcgcacccatgaacgatcgtgtcgaa
gaggtgattcatcatcgcaagttcatggacaaactggaggacgaagtggatgccaagatt
gttgaaatgaagcaggcacagcctaagggagtcttctatcacgtttgctggagtgaatcc
tacccaggatacgtctctctacgattcatcatgaacagaactcctcgaaaccatactatt
ggaatcacacccgatggtttcgcatggggatcaatgaacttcaacagcatggacaggctc
ttgaatgcattcaagaagaatccaggtggtccaggatcacgtcaacctgatcgcagtctt
ggaggaagtacctcgggaggaagcgtatctacttctaggcagtctactggaatgagaacg
gaagacacgagtcgtcaatcgcgttggggagcacctccaccacctactcttccaccgccg
agtcgttggggaatgccacctcctgcggggcctccgccgtcgtttgccgcccctcctcct
catagttatcagtag
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