Thalassiosira pseudonana: THAPSDRAFT_269540
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Entry
THAPSDRAFT_269540 CDS
T01078
Symbol
CHC
Name
(RefSeq) clathrin heavy chain
KO
K04646
clathrin heavy chain
Organism
tps
Thalassiosira pseudonana
Pathway
tps04142
Lysosome
tps04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
THAPSDRAFT_269540 (CHC)
04142 Lysosome
THAPSDRAFT_269540 (CHC)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
THAPSDRAFT_269540 (CHC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_269540 (CHC)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_269540 (CHC)
Membrane trafficking [BR:
tps04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
THAPSDRAFT_269540 (CHC)
Exosome [BR:
tps04147
]
Exosomal proteins
Proteins found in most exosomes
THAPSDRAFT_269540 (CHC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_H_link
Clathrin_propel
Clathrin-link
TPR_COPA_B
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
7449343
NCBI-ProteinID:
XP_002292930
JGI:
269540
UniProt:
B8C8U9
LinkDB
All DBs
Position
10:complement(1033771..1040103)
Genome browser
AA seq
1718 aa
AA seq
DB search
MAGVPIAFSEVLNLQQLGIPETSIKHGLTTMESDKWIVSVEPTQVSLIDLQNQAAVTRRP
IKAEAAVMNPSSNILALRSGKMIQMFNLDTKQKLKSHDMDSPIVFWKWTSADNLALVTAT
SVHHWSSTEGSSAPTKMFDRHPTIGPNTQIINYQVSPDSKWCLLGGISANPGGGVNGNMQ
LYSVEKKVSQPLQGHAGAFHKFKVSGREDEAQVLVFHEKKSDDPAHKLFVMEVGRDPSKG
QPFRIPPTVIPVPPEAAADFPVSLVVDAKDDVAFLLSKMGFVYMFDIQSGKTMFRTRITQ
ETVFVTCSQSSTGAVFGITVRTGKVLRISLNGQNLVPYIVNTLRDNDLAIKVAGRLGLPG
AEHLYTAEFERLISAGQVKEAAVLVANSGSALRTPQTIARFQQIPAQPGAPQPVFQYFST
LLENVKLNEQESIELAKPVLQQGRPQLMEKWLKDDKLHCSEALGDLIMPHDTAMALSVYL
RSECHAKAIQCFVQRGEYDKIVPYSTSVGYSMDYSSMLSQLLFNNPQGALDLAKGLVSAE
GGPLIDIQATAEAFLSSNRVQETTAFLLEALKDNKQEHAYLQTKLLEINLIGGAPQVADA
IMQNGILTHYDKAHVGKLCERAGMWQRAAEHYTDINDIKRVFKNSHQMNPEFVVTYFGKL
NRDQSIALLKDMLSRGPTNMQVCVEVAKKYHEELGASELVKVFEANKATEGLYYFLGAVV
NFSEDSVVHFKYIQSACMLGQFKEAERVCRDSNIYDPAEVKEYLKNAKLPDPRPLIHVCD
RFDFVDELTEYLYLNSLLQYVEVYVTKVSPTKTPQVVGKLFDLGANQDFVKRILMAVGTA
CPVDEMVEIAETRNRLRMLQPWLEARVATGSTEPGTHNALGKIYIQMNKDPKAFLTNNMF
YEPKVLGPFCESLDPSLAFVAYKKGAGECDDELIKISFTHGLYRDLARYLVERQDLELWA
KSATEKESQRRQLIDQVVEWALPESTSADEVSCTVKAFMAADLPGELITLLERIILQGSD
FSDNKNLQNLLILTAIRADHTRVASYIDQLDNFDAKDIALICVSESHMLYEEAYSIYNKF
AKPEFTQEKEEQVEMQVLAIGVLVDFMKDLDRAKGFANQVDEKPVWSKLGKSQLEEKMAA
EAILSFINAEDASEYVKVCAEANEAEIYTELIPFLKMARKGLQENLLDTELIYAYAKTNN
LTELEVFVNGPNVSNIQNIGDRCFSEGLYHAAKLLYTNINNNSKLALCHIHLEEYREAVA
AATKANNVSTWKQVCFACLKADEFRLASTCGLEVIKYPDHLDEVVTFYSDLGHFDHLISL
FEQGLGLEDAHIGIFTELGILYTKHVPDKVMEHCKVFFSKLNVSKVVRACERARLWAPAV
YLYMADKQFDNAVKVMSERANSFDNDLFLDSIVKVRNAEIMYKAVNFYLTMHPTLFTRLM
EVLEDHVDHSRVVNQLRRTGDWALQIGQAYMKSVQKANLSAVNEALNELYIEDEDYESLR
KSIDKFKNFNMIALASKLATHELLEFRRISAYVYRCNSKWSQSIELSKNDRMWKDCIDTA
NESADAEIIENLLRFFCETSEKECFCAALYTCFAHVRPDVVLELGWLNGYHNFIMPFFIQ
NMRQTHDRLRALEERTKPPKEDENQDLIAQTYSQLGGFNNMLMLENAPGGGMPGMPPQHG
GGIDMSGFANAGGMQLQPGMMPNGGMPQPGMMPNGGMY
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggttcctattgccttcagcgaggtgctcaatcttcaacaattgggcatcccc
gaaacctccatcaaacatggcctcaccaccatggaatccgacaaatggatcgtctccgtc
gaacccacccaagtctcactcattgacctccaaaaccaagcagccgtcacccgtcgtccg
atcaaggcagaagcagccgtcatgaacccatcctccaacattctcgctttgcgatctgga
aagatgattcaaatgttcaatcttgacacgaagcaaaagttaaagtctcacgatatggac
agtcccattgtcttctggaagtggacttcggcagacaaccttgccctcgtcaccgccacc
tccgtacaccactggtcgtccaccgaggggtcctccgcccccaccaaaatgtttgaccgt
catccaaccattggacccaatacccaaatcattaattatcaagtctcccccgattccaag
tggtgtttgctcggtggcatcagtgccaatcccggtggcggagtcaatggcaacatgcag
ctttacagtgtggagaagaaggtgtctcagcctcttcagggacatgccggtgcatttcac
aagttcaaggtgtcaggtagggaggatgaggctcaggttctcgtctttcacgagaagaag
tcagatgatcctgcacataagttgttcgtgatggaggtgggaagggatccttccaaggga
cagccgtttcgtattccccccactgtgattcctgtgcctccggaggcagctgcggatttc
ccagtgtctcttgtggtggatgcgaaagatgatgtcgcgttccttctttccaagatgggg
ttcgtctacatgtttgatattcagagtggaaagaccatgtttcgcacaaggataacgcag
gagactgtatttgtcacttgttctcagtcttctactggggcagtgtttggaattaccgtt
cgtacgggaaaggtgcttcgtattagcttgaatgggcagaatttggttccttacattgtc
aatacgttgagggacaatgatttggccattaaggtggctggacgattgggtcttcctgga
gctgagcacttgtacactgccgagtttgaacgtctcatctctgccgggcaagtgaaggaa
gcggctgttcttgtggccaatagtggctcggcattgaggactcctcagacgattgcgcga
ttccagcaaattcctgcacagcctggtgctcctcagcccgtgtttcagtacttctctacc
ttgttggagaatgtcaagttgaatgagcaggagagtattgagttggccaagccggtgttg
cagcagggaaggcctcagctgatggagaagtggttgaaggatgataagcttcattgctcc
gaggcgttgggtgatttgatcatgcctcacgatactgcaatggctttgagtgtgtatttg
aggagcgagtgtcatgccaaggctatccagtgcttcgtgcaacgtggggagtacgacaag
attgttccctactcgacgtctgtgggatactcgatggactattcttccatgctcagtcag
ctcttgttcaacaaccctcagggtgctttggatttggctaagggtttggtcagtgccgag
ggaggaccattgattgatattcaggctaccgccgaggcctttctctccagcaacagggtg
caagagactactgccttcttgctggaagcactcaaggacaacaaacaggagcatgcctac
ctccagacgaagcttcttgagatcaacctcattggtggagctccccaagttgctgacgcc
atcatgcagaatggaattttgactcactacgataaggctcacgttggaaagctttgcgag
cgtgctggaatgtggcaacgtgctgctgaacactacaccgacatcaacgatatcaaacgt
gtcttcaagaacagccaccagatgaatcctgagtttgttgtcacctactttggaaagttg
aaccgtgatcagagcattgctcttttgaaggacatgctctcccgtggtcccaccaacatg
caagtctgtgtggaggttgccaaaaagtaccacgaggagcttggagcgtcggagcttgtc
aaggtgtttgaggccaacaaggcaacggagggtctttactacttccttggcgccgtggtg
aacttctcagaggattcggtagttcatttcaagtacatccaatctgcgtgtatgcttggt
cagttcaaggaggctgaacgtgtgtgcagggattctaacatttacgatcctgctgaagtg
aaggagtatcttaagaatgcgaagcttcccgacccacgtcctcttattcacgtgtgcgac
cgtttcgatttcgtggacgagcttacggagtatttgtacttgaacagtcttcttcagtac
gttgaggtctacgtcaccaaagtctctcctaccaaaactccccaggtcgttggaaagctc
tttgacctcggagccaatcaggatttcgtcaaacgtattctgatggctgttggaactgcc
tgccccgtggatgagatggtggagatcgccgagactcgtaatcgtcttcgtatgctccag
ccttggcttgaggctcgtgttgccactggaagcaccgaacctggaactcacaatgctctc
ggaaagatttacattcagatgaacaaggatcccaaggcgtttttgaccaacaatatgttc
tacgagcctaaagttcttggtcctttctgtgagagtttggatccttcgttggcattcgtt
gcttacaaaaagggtgctggagagtgtgacgatgagttgatcaaaatcagtttcacccat
gggttgtatcgtgatcttgcgaggtatctcgttgagcgtcaggatttggagttgtgggcg
aagtctgctacggagaaggagagtcagcgtaggcaactcattgatcaggtggttgagtgg
gcgctccctgagagtacttctgctgatgaggtgtcttgtactgtgaaggcattcatggct
gccgatcttcccggagagctcatcactcttcttgagcgcattatcttgcaaggatcggac
ttctcagacaacaaaaatcttcagaacttgctcatcctcaccgccatccgtgccgatcat
acccgtgttgcatcctacatcgatcagttggataactttgacgccaaagatattgcactc
atttgcgtgtctgagagtcacatgctctacgaggaggcatacagcatctacaacaagttt
gccaagcctgaattcacccaggagaaggaggaacaggtggagatgcaagtccttgccatt
ggcgtcctcgttgacttcatgaaggatctggatcgtgctaagggctttgctaaccaagtt
gacgagaagcctgtgtggtctaagcttggtaaatctcagttggaggagaagatggctgcc
gaggctattctcagtttcatcaatgctgaggatgccagtgaatacgttaaagtgtgtgcc
gaagccaacgaggctgaaatctacacggagcttatccccttcctcaagatggcacgtaag
ggattgcaggagaatcttttggatacggagctcatctacgcatatgctaagaccaacaac
ttgactgagcttgaggtgtttgtgaacggacccaatgtttcaaacattcagaacatcggc
gatcggtgcttctctgaggggctctaccacgcggcgaagctactctacacgaacatcaac
aacaactcgaagcttgcactttgtcacattcatttggaggagtaccgtgaggctgttgct
gcagctaccaaggcgaacaatgtttctacttggaagcaggtgtgctttgcctgtctcaag
gctgacgagttccgccttgcctccacttgtggacttgaggtcatcaaataccctgatcat
ttggacgaggtggttaccttctactctgatcttggtcactttgatcatctcatttcgctc
tttgagcaaggacttggtttggaagacgctcacattggtatcttcactgaacttggaatt
ctttacactaagcacgttcccgataaggtcatggaacattgcaaggtgttcttcagcaag
ctcaacgtgtccaaagtcgtccgtgcctgcgagcgcgctcgtctctgggctcccgctgtc
tacctctacatggctgacaagcagtttgacaatgctgtcaaggtcatgtctgaacgtgcg
aactccttcgacaacgacttgttcttggattccattgtgaaggttcgcaatgccgagatc
atgtacaaggcagtgaacttctacctcaccatgcacccaacgctttttacgaggttgatg
gaggtgcttgaagaccatgttgatcactccagggtcgtcaatcagcttcgtcgtactggt
gactgggcattgcagatcggccaggcctacatgaagtctgtacagaaggcgaatctcagt
gctgtcaatgaagctctcaacgagctctacattgaagatgaggactacgagtcattgagg
aagtccatcgacaagttcaagaacttcaacatgattgctcttgcttccaaacttgccacc
cacgagcttttggagttccgtcgtatctccgcctatgtctaccgatgcaacagcaagtgg
tctcaatccatcgagctttccaagaacgaccgcatgtggaaagactgcatcgacaccgcc
aacgaatctgccgatgctgaaatcattgagaatttgcttcgcttcttctgcgagacatcg
gagaaggagtgcttctgtgctgcactttacacttgcttcgctcacgttcgtcctgacgtg
gttcttgagcttggatggctcaacggttaccacaacttcatcatgcctttctttatccag
aacatgcgtcagactcacgatcgtcttcgtgctttggaggagcgcaccaagcctccaaag
gaagacgagaaccaagacctaatcgcacaaacttacagtcaacttgggggcttcaacaat
atgctaatgcttgagaatgctcctggaggtggaatgccgggaatgccaccacagcatggg
ggaggcatcgacatgagtggctttgcgaatgctgggggaatgcaactgcaaccaggtatg
atgccgaacgggggaatgcctcaacctgggatgatgcctaacggcggcatgtattag
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integrated database retrieval system
