Thalassiosira pseudonana: THAPSDRAFT_269556
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Entry
THAPSDRAFT_269556 CDS
T01078
Name
(RefSeq) dead box family RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03013
Nucleocytoplasmic transport
tps03015
mRNA surveillance pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_269556
09122 Translation
03013 Nucleocytoplasmic transport
THAPSDRAFT_269556
03015 mRNA surveillance pathway
THAPSDRAFT_269556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_269556
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_269556
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THAPSDRAFT_269556
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
THAPSDRAFT_269556
Spliceosome [BR:
tps03041
]
Complex C
Other components
EJC/TREX
THAPSDRAFT_269556
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
THAPSDRAFT_269556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
ResT-TelK_cat
Motif
Other DBs
NCBI-GeneID:
7443261
NCBI-ProteinID:
XP_002296387
JGI:
269556
UniProt:
B8LBP2
LinkDB
All DBs
Position
11
Genome browser
AA seq
433 aa
AA seq
DB search
MADANEEDHDLVDYDEEEEEENVVAEKTADGDSKEVKKGHYVGIHASGFKDFILKPECLR
AVVDCGFEHPSEVQHECIPQAVLGMDIVCQAKSGMGKTAVFVLATLHQLNPNAFPAGENQ
VSVLVLCHTRELAFQIAHEYERFSKYLPEVKTAVFYGGVSIKTNRDVLKNDCPHIVVGTP
GRVLGLAREKTLKLDHIKHFVLDECDRILESLDMRRDIQEIFRMTPHEKQVMMFSATLSK
EIRPVCKKFCQDPMEIYVDDDTKLTLHGLQLYYVKLAEAEKNRKLNDLLDALEFNQVVIF
VSKVARANELNRLLTECNFPSICIHAGQKQDERIAKYKSFKEFNARILVSTDLFGRGIDI
ERVNVVINYDFPDDSDQFLHRVGRAGRFGTKGLAISFISSEPDQEILDKVQSRFEVNIPE
LPDEIDASAYMSA
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcaaacgaagaagatcacgacctcgtcgactacgacgaagaagaggaggaa
gaaaacgtcgttgctgaaaagaccgccgacggtgacagcaaagaagtcaagaagggtcac
tatgtaggaatccacgcctccggtttcaaagatttcatcctcaaacccgaatgcctccgt
gctgtcgtcgactgcggcttcgagcatccttccgaggtccagcacgagtgcatcccccaa
gccgttttgggaatggacattgtctgtcaggccaagtctggtatgggaaagactgccgtg
tttgtattggcgactcttcatcagttgaaccccaatgctttccccgcgggcgagaaccaa
gtcagtgtgttggtgttgtgtcacactcgtgagttggcgtttcagattgctcacgagtat
gagcgtttctccaagtacttgcctgaggtgaagacggccgtgttctatggaggagtgagt
atcaagacgaacagggacgtgctcaagaatgactgccctcatatcgtggtgggaactccc
gggcgtgtgttaggattggcaagggagaagactctcaaattggatcacattaagcacttt
gtccttgatgagtgtgatcgtatcttggaatcgttggatatgcgtcgtgatattcaggag
atcttccgtatgactccccatgagaagcaggtgatgatgttcagtgccacgttgagcaag
gagattcgtcccgtgtgcaagaagttttgccaggatcccatggagatctacgttgacgat
gataccaagttgactcttcacggattgcagttgtactacgtgaagctagccgaggcggag
aagaatcgcaagttaaacgatttgttggatgctcttgagtttaaccaggttgtcattttc
gtgtccaaggtggcgcgtgccaatgagctcaaccgtctcttgactgagtgcaacttccct
tccatctgtattcatgctgggcagaagcaggacgagcgtattgccaagtacaagtcgttc
aaggagttcaacgcccgtatccttgtgtctactgacttgttcgggcgtggtattgatatt
gagcgtgtcaatgtggtgatcaactatgacttccccgatgattcagatcagttcttgcac
cgtgttggacgtgctggtaggttcggtactaagggtcttgctatttccttcatctccagt
gagcctgatcaggagattctcgataaggtccagagtcgcttcgaggtaaacattcctgag
cttcctgatgagattgatgcttcggcgtacatgagtgcttag
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