KEGG   Thalassiosira pseudonana: THAPSDRAFT_269747
Entry
THAPSDRAFT_269747 CDS       T01078                                 
Name
(RefSeq) coatomer COPII
  KO
K14007  protein transport protein SEC24
Organism
tps  Thalassiosira pseudonana
Pathway
tps04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    THAPSDRAFT_269747
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tps04131]
    THAPSDRAFT_269747
Membrane trafficking [BR:tps04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    THAPSDRAFT_269747
SSDB
Motif
Pfam: Sec23_trunk Sec23_BS Sec23_helical zf-Sec23_Sec24 Gelsolin
Other DBs
NCBI-GeneID: 7451213
NCBI-ProteinID: XP_002293712
JGI: 269747
UniProt: B8CC85
LinkDB
Position
14:314744..318315
AA seq 831 aa
MFAPPNQQPQQQPAPPQQQPQQPGMGFQNLNQPQPGASPFGFQQQQQQQAMGGSHAPQMG
APPTPQQPGKPTMSMPQGGVPAMTGGTAAPPSEYFEENIDYSIQVPSRMLRLSSQYIPAS
ASMAHAVKVPLGAVIRPLAPCAEDEEDVKVVQPGAAGIVRCKRCRTYINAFVTWLENGRC
WRCNICAQRNECPAPYFCHLDEQGQRRDRDQRPELSEGVVEFIAPSEYMVRPPQPPSYFF
VIDVSMASVRSGMLKSAAKAIAESLDDLPGSPRTQVGFITYDESVHYYSLKSGLANPQML
VVADLVELFVPAPDDLLVNLQESREVIDVFLDNLPNMFAKTTSQSACLGPALKAAFTVTK
HIGGKMSVFQSVLPTLGDGALVPRENNQIMGTPDEVKLLRPAQSWYKDTAIEFSRAQISV
DMYLFPRAYIDVASLGDLPKLTAGTLHTYPGFNYETDGPRFESELCRALTQHTAFEAVMR
IRCTRGMRISNFYGNFFVRGTDLLALPNCNADSTFAFDLVHDEQNLNSSFVTVQSALLYT
SSEGERRIRVVTQAISVSSLASEVVQSVDVDALTTLLAKQGLDIGIKSNLDNARQKLQQV
CADVIRASKEGDKPHDGEKPVPENLKLLPLYTLALMKNVALRGGTDVHPDERVHAMHRLT
NMWVADSKHYVYPRMFSLHDMSPNAGLPSNTDEDDDEKVAGIDRIELPRVLNLTIDRLAS
NGIFLLDNGVDMFLWVGRSSDPALLNSLFGTNSLEGIDMSQIKLQTSGNDFASRLHSVVS
ALREDDSPHALVAKVTIVREGDHGLESRFFWYLVEDSASFNGGTFSYADFS
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgtttgctcctccaaatcaacaaccacaacagcaacctgctcctcctcaacaacaacca
caacaaccaggaatgggctttcaaaacctcaatcaaccgcaaccaggagcatctcccttt
ggattccaacaacaacaacaacagcaagcaatggggggatctcacgctcctcaaatgggt
gcccctcccactcctcaacaacccggcaaaccaaccatgtccatgcctcaaggaggagtg
cccgccatgacgggaggaacagccgcacctccatccgaatactttgaagaaaacattgat
tactccattcaagtcccctctcgtatgcttcgtctgagcagtcaatacattcctgcttct
gcctccatggctcatgctgtgaaggtaccactgggtgcggtgattaggccattggctccg
tgtgcggaggatgaggaggatgttaaggttgtgcagccgggggctgcgggaattgtgagg
tgtaagagatgccgaacatacatcaacgccttcgtaacatggctcgaaaacggccggtgt
tggcgttgcaacatctgcgcccaacgcaacgaatgccccgcaccctacttctgccaccta
gacgaacaaggccaacgccgcgatcgcgaccaacgccccgaactctccgagggagtagtc
gaattcatcgcaccctcagaatacatggttcgtcctcctcaaccaccatcgtactttttc
gttattgatgttagtatggcgagtgtgaggagtggaatgttgaagagtgcagcgaaggct
attgcggagagtttggatgatttgcctgggagtccacgtactcaggttggtttcatcacg
tatgatgagtcggttcattactacagtctcaagtcggggttggcgaatccacaaatgttg
gtggtggctgatttggtggagctttttgttcctgccccggatgacttgcttgtcaacctg
caagagtctcgtgaggtgattgacgtattccttgacaatctgcccaacatgtttgccaag
acgacgtctcagtcggcttgtctcggacctgcgttgaaagcggcctttacggtgacaaag
cacattggtgggaagatgagcgtgttccagtcggtactgcccacgttgggggatggggct
cttgtgccacgtgaaaacaatcaaatcatgggtactccggatgaagtgaagttgttgcgt
ccagctcaaagttggtacaaagacactgcaattgagtttagcagggctcagattagtgtg
gacatgtatctctttcctcgggcgtacattgatgtcgcttctcttggtgatcttcccaaa
ctcacggccggtactctacacacgtatcctgggttcaattacgagactgatggccctcgg
ttcgagtcggagctttgtcgtgcattgactcagcataccgcctttgaagcagtgatgcgc
attcggtgcactcgtggcatgcgcatcagcaacttttacggcaacttctttgtgcgtggg
acggatttgttggctcttcctaactgcaatgccgattctacttttgcctttgatttggtg
cacgatgagcagaacttgaacagctcatttgtcacggtacagagtgctttgttgtacacc
agcagtgagggtgagaggcgtattcgtgtggtaacgcaagctatctcggtctcttctctc
gcgtcggaggtggttcagtcagtggatgtagacgcgttgacgacattgctcgccaagcag
gggcttgatattggcatcaaatccaaccttgacaatgctcgtcagaagttgcagcaagtc
tgtgcggatgtgattcgtgcctcaaaagagggcgataaacctcacgacggggagaagcca
gtgcctgagaacttgaaattgttgccactctacacattggctttgatgaagaatgtagct
cttcgcggaggaacggacgttcaccctgacgagagagtgcacgccatgcatcgtctcacc
aacatgtgggtggctgattcaaagcactacgtgtatcctcgcatgttctcgctgcatgac
atgagtccaaacgctggtttgccgtccaatactgatgaggatgatgacgagaaggttgcc
ggaatcgatcgtattgagctccctcgcgttttgaacctcaccattgatcgcctcgctagc
aacggtatctttttgttggacaatggtgtcgacatgttcttgtgggtaggcaggtcatcg
gatccagctctactcaactcgttgttcgggacaaactcattggagggtattgatatgtct
cagatcaaactacaaaccagtggaaatgacttcgcttcacgtcttcatagcgtcgtgtcg
gctttgagagaagacgattcgccacatgccctcgtagccaaggttactattgttcgcgag
ggagatcatggattggaatctcgcttcttctggtatctcgttgaagacagtgcatcgttc
aacggaggaaccttttcgtatgcagatttcagt

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