Thalassiosira pseudonana: THAPSDRAFT_269747
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Entry
THAPSDRAFT_269747 CDS
T01078
Name
(RefSeq) coatomer COPII
KO
K14007
protein transport protein SEC24
Organism
tps
Thalassiosira pseudonana
Pathway
tps04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
THAPSDRAFT_269747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_269747
Membrane trafficking [BR:
tps04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
THAPSDRAFT_269747
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
7451213
NCBI-ProteinID:
XP_002293712
JGI:
269747
UniProt:
B8CC85
LinkDB
All DBs
Position
14:314744..318315
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AA seq
831 aa
AA seq
DB search
MFAPPNQQPQQQPAPPQQQPQQPGMGFQNLNQPQPGASPFGFQQQQQQQAMGGSHAPQMG
APPTPQQPGKPTMSMPQGGVPAMTGGTAAPPSEYFEENIDYSIQVPSRMLRLSSQYIPAS
ASMAHAVKVPLGAVIRPLAPCAEDEEDVKVVQPGAAGIVRCKRCRTYINAFVTWLENGRC
WRCNICAQRNECPAPYFCHLDEQGQRRDRDQRPELSEGVVEFIAPSEYMVRPPQPPSYFF
VIDVSMASVRSGMLKSAAKAIAESLDDLPGSPRTQVGFITYDESVHYYSLKSGLANPQML
VVADLVELFVPAPDDLLVNLQESREVIDVFLDNLPNMFAKTTSQSACLGPALKAAFTVTK
HIGGKMSVFQSVLPTLGDGALVPRENNQIMGTPDEVKLLRPAQSWYKDTAIEFSRAQISV
DMYLFPRAYIDVASLGDLPKLTAGTLHTYPGFNYETDGPRFESELCRALTQHTAFEAVMR
IRCTRGMRISNFYGNFFVRGTDLLALPNCNADSTFAFDLVHDEQNLNSSFVTVQSALLYT
SSEGERRIRVVTQAISVSSLASEVVQSVDVDALTTLLAKQGLDIGIKSNLDNARQKLQQV
CADVIRASKEGDKPHDGEKPVPENLKLLPLYTLALMKNVALRGGTDVHPDERVHAMHRLT
NMWVADSKHYVYPRMFSLHDMSPNAGLPSNTDEDDDEKVAGIDRIELPRVLNLTIDRLAS
NGIFLLDNGVDMFLWVGRSSDPALLNSLFGTNSLEGIDMSQIKLQTSGNDFASRLHSVVS
ALREDDSPHALVAKVTIVREGDHGLESRFFWYLVEDSASFNGGTFSYADFS
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctcctccaaatcaacaaccacaacagcaacctgctcctcctcaacaacaacca
caacaaccaggaatgggctttcaaaacctcaatcaaccgcaaccaggagcatctcccttt
ggattccaacaacaacaacaacagcaagcaatggggggatctcacgctcctcaaatgggt
gcccctcccactcctcaacaacccggcaaaccaaccatgtccatgcctcaaggaggagtg
cccgccatgacgggaggaacagccgcacctccatccgaatactttgaagaaaacattgat
tactccattcaagtcccctctcgtatgcttcgtctgagcagtcaatacattcctgcttct
gcctccatggctcatgctgtgaaggtaccactgggtgcggtgattaggccattggctccg
tgtgcggaggatgaggaggatgttaaggttgtgcagccgggggctgcgggaattgtgagg
tgtaagagatgccgaacatacatcaacgccttcgtaacatggctcgaaaacggccggtgt
tggcgttgcaacatctgcgcccaacgcaacgaatgccccgcaccctacttctgccaccta
gacgaacaaggccaacgccgcgatcgcgaccaacgccccgaactctccgagggagtagtc
gaattcatcgcaccctcagaatacatggttcgtcctcctcaaccaccatcgtactttttc
gttattgatgttagtatggcgagtgtgaggagtggaatgttgaagagtgcagcgaaggct
attgcggagagtttggatgatttgcctgggagtccacgtactcaggttggtttcatcacg
tatgatgagtcggttcattactacagtctcaagtcggggttggcgaatccacaaatgttg
gtggtggctgatttggtggagctttttgttcctgccccggatgacttgcttgtcaacctg
caagagtctcgtgaggtgattgacgtattccttgacaatctgcccaacatgtttgccaag
acgacgtctcagtcggcttgtctcggacctgcgttgaaagcggcctttacggtgacaaag
cacattggtgggaagatgagcgtgttccagtcggtactgcccacgttgggggatggggct
cttgtgccacgtgaaaacaatcaaatcatgggtactccggatgaagtgaagttgttgcgt
ccagctcaaagttggtacaaagacactgcaattgagtttagcagggctcagattagtgtg
gacatgtatctctttcctcgggcgtacattgatgtcgcttctcttggtgatcttcccaaa
ctcacggccggtactctacacacgtatcctgggttcaattacgagactgatggccctcgg
ttcgagtcggagctttgtcgtgcattgactcagcataccgcctttgaagcagtgatgcgc
attcggtgcactcgtggcatgcgcatcagcaacttttacggcaacttctttgtgcgtggg
acggatttgttggctcttcctaactgcaatgccgattctacttttgcctttgatttggtg
cacgatgagcagaacttgaacagctcatttgtcacggtacagagtgctttgttgtacacc
agcagtgagggtgagaggcgtattcgtgtggtaacgcaagctatctcggtctcttctctc
gcgtcggaggtggttcagtcagtggatgtagacgcgttgacgacattgctcgccaagcag
gggcttgatattggcatcaaatccaaccttgacaatgctcgtcagaagttgcagcaagtc
tgtgcggatgtgattcgtgcctcaaaagagggcgataaacctcacgacggggagaagcca
gtgcctgagaacttgaaattgttgccactctacacattggctttgatgaagaatgtagct
cttcgcggaggaacggacgttcaccctgacgagagagtgcacgccatgcatcgtctcacc
aacatgtgggtggctgattcaaagcactacgtgtatcctcgcatgttctcgctgcatgac
atgagtccaaacgctggtttgccgtccaatactgatgaggatgatgacgagaaggttgcc
ggaatcgatcgtattgagctccctcgcgttttgaacctcaccattgatcgcctcgctagc
aacggtatctttttgttggacaatggtgtcgacatgttcttgtgggtaggcaggtcatcg
gatccagctctactcaactcgttgttcgggacaaactcattggagggtattgatatgtct
cagatcaaactacaaaccagtggaaatgacttcgcttcacgtcttcatagcgtcgtgtcg
gctttgagagaagacgattcgccacatgccctcgtagccaaggttactattgttcgcgag
ggagatcatggattggaatctcgcttcttctggtatctcgttgaagacagtgcatcgttc
aacggaggaaccttttcgtatgcagatttcagt
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