KEGG   Thalassiosira pseudonana: THAPSDRAFT_270037
Entry
THAPSDRAFT_270037 CDS       T01078                                 
Name
(RefSeq) U2 SnRNP auxillary factor, splicing factor
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
tps  Thalassiosira pseudonana
Pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_270037
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_270037
Spliceosome [BR:tps03041]
 Complex A
  U2 snRNP components
   U2 related factors
    THAPSDRAFT_270037
 Complex B
    THAPSDRAFT_270037
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4
Other DBs
NCBI-GeneID: 7448537
NCBI-ProteinID: XP_002294600
JGI: 270037
UniProt: B8CET6
LinkDB
Position
20:377347..378228
AA seq 197 aa
MARRLAQIHGTEEDKVNCPFYFKIGACRHADRCSRIHHRPAFSPTILIKHIYRHPLREAE
LKAASEGRAVDGIEVDEAEAREDFLVFFEDFFEELSKFGRLEALHICDNLGDHMVGHVYA
KFSDEEEAADALNVMNGRFYDGRKMEVEFSPVTDFREARCRDFDEETCRRGGFCNFLHIK
PVPMCLIRDMEEDAEEE
NT seq 591 nt   +upstreamnt  +downstreamnt
atggcaagacgtttggctcagattcatggcacggaagaggacaaggtaaactgtcccttc
tacttcaaaataggagcctgtcgccacgccgaccgctgctctcgcatccaccaccgtcca
gccttctctccaaccattcttatcaagcacatctaccggcatccgttgcgagaggctgag
ttgaaggcggcgagtgagggtagggccgtggatgggattgaggtggatgaggctgaggct
agggaggactttttggtgttctttgaagatttctttgaagagctatctaagtttggcaga
ctcgaagccctccacatctgcgacaacctcggcgatcacatggtaggacacgtctacgcc
aagttttcagacgaagaagaagcagccgatgcactcaacgtaatgaatggtcgtttctac
gacggacgcaagatggaagtggagtttagtcctgtcactgactttcgtgaggcacgttgc
cgagacttcgatgaggagacgtgtcgtcggggcgggttctgtaactttcttcatattaag
cctgtgccaatgtgtttgattagagacatggaggaggatgctgaggaggag

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