KEGG   Thalassiosira pseudonana: THAPSDRAFT_270087
Entry
THAPSDRAFT_270087 CDS       T01078                                 
Name
(RefSeq) WD40-repeat protein
  KO
K13137  serine-threonine kinase receptor-associated protein
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_270087
Spliceosome [BR:tps03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    THAPSDRAFT_270087
SSDB
Motif
Pfam: EIF3I WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR55 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_EML Beta-prop_IFT140_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 RMC1_N Beta-prop_NUP159_NUP214 WD40_like Beta-prop_Vps41 Nucleoporin_N PQQ_2
Other DBs
NCBI-GeneID: 7442840
NCBI-ProteinID: XP_002295040
JGI: 270087
UniProt: B8CFL5
LinkDB
Position
22:complement(499231..500593)
AA seq 327 aa
MAPPSEPTASTKGRQIPIVCPGHTRPLAELQFCSVNDNPNGDDEPRTFLVSACHDKCPMV
RDAESGDWIGTFKGHKGAVWSCRLDPAAFLGATASGDFSVKVWDAITGSPLHSFPHKHVV
KSCDWSPDSKRLATGGNEGILRVFDIVHPEKAPLEFVQSEKEVVSISKCNWIDNHTVLAA
CSDGSIRFWNVDASDPTQQLTRTLQVKDGVRDMELQALSSNNKTILTVAAGDKVTFFDMA
TGDMIHSYKMPIHFREEGGASLHPSGAKFIAGGSDLWVRVFDFESGEELECHKGHHGPVR
CLRYHPDGKSYATGSEDGTIRLWKTDP
NT seq 984 nt   +upstreamnt  +downstreamnt
atggcacccccctccgaaccaaccgcctccaccaaaggtcgtcaaatccccatagtctgc
ccaggccacacccgccctctcgccgaacttcaattctgttccgtcaacgacaatcccaac
ggggacgatgaaccgcgtacctttctcgtatcggcgtgtcatgacaagtgtcccatggtg
agggatgcagagagcggggattggattggaacgttcaaggggcataagggggcggtttgg
agttgtaggttggatcctgcggcttttttgggggctactgctagcggcgacttcagcgtc
aaagtatgggacgcaatcaccggctctcccctccactccttcccccacaaacacgttgtc
aaatcctgcgattggagtccagactccaaacggctcgccaccgggggaaacgaggggata
ttacgagtgtttgacatcgtgcatccggaaaaggcacctttggagttcgtccaaagtgag
aaggaagtggtttctatttcgaaatgtaactggattgataatcataccgttcttgctgct
tgttcggatggatccattcgcttctggaacgtggatgcttctgatccaactcaacaactc
acacgcaccctccaagtcaaagatggagttcgtgacatggaacttcaagctctatcgtcc
aacaacaaaacaatactcacagtagcggcaggggacaaggtgactttcttcgacatggcc
acgggtgatatgattcactcgtacaaaatgccaatccattttagagaagagggaggagca
tctctacaccccagtggagccaagtttatcgccggggggagtgatttgtgggtacgtgtg
tttgattttgagagtggagaggaattggaatgtcataaggggcatcatggaccggtgagg
tgtttaaggtatcatccggatgggaagagttatgctacggggtcggaggatgggactatt
cgtttgtggaagactgatccttag

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