Thalassiosira pseudonana: THAPSDRAFT_270334
Help
Entry
THAPSDRAFT_270334 CDS
T01078
Name
(RefSeq) predicted protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00061
Fatty acid biosynthesis
tps00071
Fatty acid degradation
tps01100
Metabolic pathways
tps01212
Fatty acid metabolism
tps04146
Peroxisome
Module
tps_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
THAPSDRAFT_270334
00071 Fatty acid degradation
THAPSDRAFT_270334
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
THAPSDRAFT_270334
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
tps01004
]
THAPSDRAFT_270334
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tps04147
]
THAPSDRAFT_270334
Enzymes [BR:
tps01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
THAPSDRAFT_270334
Lipid biosynthesis proteins [BR:
tps01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
THAPSDRAFT_270334
Exosome [BR:
tps04147
]
Exosomal proteins
Exosomal proteins of breast milk
THAPSDRAFT_270334
Exosomal proteins of breast cancer cells
THAPSDRAFT_270334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-GeneID:
7442402
NCBI-ProteinID:
XP_002291517
JGI:
270334
UniProt:
B8C658
LinkDB
All DBs
Position
6:complement(1257697..1260333)
Genome browser
AA seq
792 aa
AA seq
DB search
MVPCRLARGALLVVFTSYSSSTYAFAPPQSSSASILSSQVIRQMTTSMEQTEVMSDEDED
VLFGGSSIKYPGRNRKVTKTGVVLPDNTNRPNPLDHSKDPLVNKLRTMRETVSSCPAIWK
ELAINCPDNRALVDDHLCDEKMDLTFKQMEDKVRRSAAAFKNLGVKKGVNVAVLGENSAM
WLIVDHGIQLAGGASAVRGADAPLDELRYIYEHSDSAGIAVLQDVNLLQKLAKDAKAKGL
DSLGLRNDSSGAVKTIVLMHKGKKTDDEIKALGDANGVEVRVLSELLDSTTPLRDKELPA
IDRSDLSTIVYTSGTTGRPKGVMLTHGNLLHQTGHRMAPTRPYDETEPLPGELMLSLLPV
WHITERTFELFMLVRGCHVVYSGIRWFKNDLAKYQPQWMVLVPRVLEKVAFGVQDKFASG
GAAVKALVKLFTATSTLKNKHQKIRKGLVVGDEPPTPMDGIISTIIVKALAPLNFLGNKL
VWKKVQDGFGGRQRVIISGGSALAGSLETFYENCGIDILVGYGLTECSPLLSYRRTDSNL
VTAGCVGFAATDTELRVVDPEANPENGERKALPDGLAGVVLGRGPQVMKGYYKNPEATGK
AVDKWGWFDTGDLGRINPATGDLILTGRAKDTIVLSNGENIEPQPIEDAIMSESDLVEQV
MLSGQDGRSLIAITVLSPNELVNAGLLEESRAKQILKDHDIVNDPKCSEEECAEACERLA
KASAEIRAKGAVTKQVASEVKRATSSGSFRKWEQVSDVYVTLEPFAMANGLLTQSYKVKR
DFVAKRYQDELP
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggtaccctgtcgtctcgcccgcggggctttgctggtagtctttacttcgtactcatcg
tctacatatgcttttgcacctccgcaatcgtcgtcggcgtccatcctctcgtctcaagtc
atcagacaaatgacaacgagcatggaacaaacggaagtcatgtcagacgaagatgaagat
gtcttatttggaggatcgtccatcaagtatccaggacgtaatcgcaaagtcacgaaaact
ggagtggtactgccagacaacacaaatcgtccaaatccactggatcattccaaagatccc
ctcgtgaataagcttcgcacaatgcgtgaaactgtgagctcgtgccctgctatttggaag
gagcttgcaatcaactgtcctgataatcgggctctggttgatgaccacttatgtgatgag
aagatggatttgacgttcaaacagatggaggacaaagttcgtaggtctgcagctgctttc
aaaaacttgggagtgaagaaaggagtcaacgttgcagtattgggtgagaactcggcgatg
tggttgattgtggatcatggaatacaacttgctggaggagctagtgcagttagaggagcc
gatgctcctttggatgagctacgatacatctatgaacattcagatagtgctgggattgca
gttttgcaagatgttaacttgcttcaaaaactcgcaaaggatgcaaaagcaaaggggctg
gactcacttggattgcgcaatgactcctctggagctgtcaagactatcgttttgatgcac
aagggcaagaagactgatgatgaaattaaggctctaggggatgcaaatggtgttgaagtt
cgtgtgttgagtgaacttcttgactcaacaactcctctccgagacaaggagcttccggcg
atagatcgatccgatttgtcaacgattgtatacacttctggaacaactgggcgccctaag
ggagtaatgttgacacacggcaatctcttgcatcaaactggtcacagaatggctccaact
cggccatatgatgaaactgaaccgcttcctggtgaattgatgctctcactacttcccgtt
tggcacattactgagcgaacatttgaactctttatgcttgtacgcggttgccacgtggta
tattctggaatccggtggtttaagaacgacttagcgaaatatcaacctcagtggatggtt
cttgtgcctagagtcttggaaaaggttgcttttggtgtgcaggacaaattcgcttcgggc
ggtgcagctgtgaaagcactggtgaaactattcactgctactagtactctcaaaaacaaa
caccaaaagatcagaaaggggttggttgttggtgatgagcctccgactcctatggacgga
atcatcagcactatcattgtaaaggctcttgctccgttgaatttcctgggaaacaagttg
gtctggaagaaagtgcaagatggatttggcggtcgtcaacgagtaatcatatctggtgga
tctgcgctggcaggatctcttgaaaccttttacgagaattgtggaattgatatccttgtg
gggtacggtctgacagagtgttccccattgctttcgtaccgacgaactgatagcaatctc
gttactgctgggtgcgttggatttgcggcaacagatactgagttgagagtggtagatccg
gaagcaaatcccgagaatggagagagaaaggcattgcctgatggtcttgcaggagttgta
cttgggcgtggcccgcaagtcatgaaaggttactacaagaaccctgaagctactggcaag
gcagtagacaagtgggggtggtttgatactggagatcttggccgcatcaatcctgcaacc
ggcgacctcattttgaccggacgtgcaaaggacacgatcgtcttgtcaaatggagagaat
atcgagccacaacctattgaagatgccatcatgagtgagtcggatttggtcgagcaagtg
atgttatccggtcaagatggacgaagtttgattgccattactgttctcagtcctaacgag
cttgtgaatgccggtctgctggaggagagccgtgctaaacaaatcttgaaggatcatgat
attgtaaacgatcctaaatgcagcgaagaggaatgtgccgaagcttgcgaaagacttgcg
aaggcttcagctgaaattagagccaagggagctgttactaagcaagttgcttcggaggtg
aaacgagcaacttcctcgggttcgttccgcaagtgggagcaagtgagcgatgtgtacgtg
accctggaaccgtttgccatggccaatgggctcttgactcagagttacaaagtgaagaga
gactttgttgcaaaacgctaccaggatgaactcccgtag
DBGET
integrated database retrieval system
