KEGG   Thalassiosira pseudonana: THAPSDRAFT_27556
Entry
THAPSDRAFT_27556  CDS       T01078                                 
Name
(RefSeq) hypothetical protein
  KO
K12828  splicing factor 3B subunit 1
Organism
tps  Thalassiosira pseudonana
Pathway
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPSDRAFT_27556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tps03041]
    THAPSDRAFT_27556
   03036 Chromosome and associated proteins [BR:tps03036]
    THAPSDRAFT_27556
Spliceosome [BR:tps03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    THAPSDRAFT_27556
 Complex B
    THAPSDRAFT_27556
 Complex C
   U2 SnRNP specific factors
    THAPSDRAFT_27556
Chromosome and associated proteins [BR:tps03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    THAPSDRAFT_27556
SSDB
Motif
Pfam: PPP2R1A-like_HEAT SF3b1 TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N RelB-like HEAT_Maestro
Other DBs
NCBI-GeneID: 7449508
NCBI-ProteinID: XP_002288450
JGI: 27556
UniProt: B8BYH0
LinkDB
Position
3:1544156..1547606
AA seq 975 aa
MMAATPMIGSSADGAVASAAAGGRKRSRQLLTPLLSSKALSMEKELETRNRPWTDAALDA
ILPSEGYTLLPPPASYMPLRTPGRKLLAAPTPFGSQTPAGFLMEVPPEEREGQTVQDIRE
AYALPYIKPEDMQYFGRLMEDVDDESALSKEEAKERQIMGLLLKIKSGTPPQRKTAMRQI
TDKARFFGAGPLFHQILPLLMSPALEDQERHLLVKVIDRVLYKLDDLVRPYVHRILAVIE
PLLIDEDYYARVEGREIISNLAKAAGLSTMISTMRPDIDNPDEYVRNTTSRAFAVVASAL
GVPSLLPFLKAVCKSRKSWQARHTGIKIVQQIAVLMGCAVLPYLRELVEIVSHGLTDEQA
KVRTMAALTVAALAEAAHPYGIESFDSVIRALWKGALEHHGKGLAAFLKAIGFVIPLMEE
NYASHYTRLVMPILTREFHSPDEEMKRIVLKVVKQCVGSAGVEPDYIRKEILPEFFRNFW
IRRMALDRRNYTQVIETTEELANKVGCSDILTRIVDDLKDDSEPYRRMVMETTQKVLENL
GSGDIDDRLEERLIDGILYAFQEQAVDAGTNGAFGKEGQIMLDGFGTVVNALGERCKPYL
KQIAGTIKWRLNNKAASVRMQAADLIGRIAVVMKACGEEQLMGHLGVVLYEYLGEEYPDV
LGSILGALRAIVNVIGMTKMTPPIRDLLPRLTPILRNRHEKVQENCIDLVGRIADRGAEF
VSAKEWMRICFELLELLKAHKKAIRRASVSTFGYIAKAIGPQDVLHTLLNNLKVQDRQMR
VCTTVAIAIVAETCGPFTVLPALMNEYRVPELNIQNGVLKALSFMFEYIGEMGKDYIYAV
TPLLEDALMDRDAVHRQTGCAAVKHLSLGVAGLGCEDALIHLLNFVWPNIFEESPHVINA
TCDAIEGLMVSLGPNVILQYTIQGLYHPARKVREIYWKIYNMLYMFAADSMVLGFPMIED
EDDNTYARTSLELFI
NT seq 2928 nt   +upstreamnt  +downstreamnt
atgatggctgccactccaatgattggttcttccgccgatggagcagttgcttctgctgct
gcggggggacgtaaacgttctcgacaactactaactccactcctttcttccaaagcacta
tccatggaaaaggaattggaaactcgcaatcgtccatggaccgacgctgccctcgacgcc
atcctccccagcgagggatacaccctcctccctcccccggcgagttacatgccgctgcgc
actccgggacgaaagctgctcgcggcacccacaccgtttggatcacaaactcccgcgggg
ttcttgatggaggtaccccccgaagaaagggaggggcagacggtgcaggatattcgagaa
gcgtacgctctgccgtatattaaaccggaggatatgcagtactttggaaggttgatggaa
gatgtggacgatgagagtgcattgagtaaggaggaggcgaaggaacgccaaatcatggga
ttgttgttgaagatcaagagtggaactccaccccaacgaaagactgccatgaggcaaatt
acagataaggctcgtttctttggtgcgggtccgttgttccatcagatattaccactgtta
atgagtccagcgttagaagatcaggagaggcacttgttggtcaaggtgattgatcgggtc
ttgtacaaattggacgatttagtgagaccgtatgttcatcgtatcttggccgtgattgaa
ccactcttgatcgacgaagattactacgcacgtgtggaggggagggagattatcagtaac
ttggccaaggctgctggattatccaccatgatttcaacgatgcgtcctgacattgacaat
ccagatgagtacgtccgaaacaccacctcgagggcatttgcagtggttgcttcggcgttg
ggtgtcccaagcctcttgccttttctcaaggctgtgtgtaagagtcgtaaatcgtggcag
gctcgtcacacggggattaagattgttcagcagattgctgttttgatggggtgcgccgtg
cttccttacttgagggagttggtggagattgtaagtcatggattgacggatgagcaggcc
aaggttcgcacgatggctgctttgacagtggcagcgctggcggaggcggctcatccgtat
ggtattgaaagttttgactctgtcattcgtgcgttgtggaagggagcgttggagcatcat
gggaagggacttgctgctttcttgaaggctattgggtttgtgattccgttaatggaggag
aactatgctagtcactacacgagattggtgatgcccatcttgacacgcgagtttcacagt
ccggatgaggagatgaagcgcattgtgctcaaggtcgtcaaacagtgtgtgggaagtgca
ggagtggagcctgactacattaggaaggagatcctaccagagttctttcgcaacttttgg
attcgtcgcatggccctggatcgtaggaactacacgcaggtgattgagacgaccgaagag
cttgccaacaaggttggatgctcggacattctaactaggattgttgacgacctaaaggat
gactcggagccttatcgtcgtatggttatggagacgacgcaaaaggtgttagagaatctt
gggagtggagacattgatgataggctggaggaacggctcattgatggtatcttgtacgct
ttccaagagcaggctgtggatgctggaaccaacggagcatttggaaaggaaggtcaaatt
atgcttgatggatttggcactgtggtcaacgctttgggagaacgctgcaagccttacttg
aagcagattgctgggaccatcaaatggcgtctgaacaacaaggctgcaagtgtacgaatg
caagcggccgatctcattggaaggattgccgttgtaatgaaggcttgtggggaggagcag
ctaatgggacatttgggtgtggtgctctacgagtacctcggagaagagtatccagatgtt
ttgggatctatccttggagcactccgcgccattgtgaatgtgataggaatgacgaaaatg
acaccgccaattagagatttgcttccaaggctgactcccattcttcgtaatcgtcacgag
aaagtgcaagagaattgcatcgatttggttggtcgtattgccgatcgtggtgccgagttt
gtgtctgccaaggaatggatgcgtatatgcttcgaacttttggaattgctcaaggctcac
aagaaggccattcgtcgtgcgtctgtgtctacctttgggtacattgccaaggctatcggt
cctcaagacgtgttacacaccttgctgaacaacttgaaggtacaagatcgtcagatgcgt
gtttgtacaacagttgccattgccattgtggccgagacatgtggtccctttactgttctt
ccggcgttgatgaacgagtatcgtgttcccgagttgaacattcaaaacggtgtgctcaag
gctctcagcttcatgtttgagtacattggcgaaatgggtaaggattacatctacgccgtc
acgcctctgttggaagatgctcttatggatcgtgatgcagttcacaggcagactggatgc
gctgctgtgaagcatttgtcactgggtgttgctgggctcggttgcgaagatgccttgatt
cacttgcttaactttgtctggccaaacattttcgaggagagtccacacgtgataaatgct
acatgtgatgcaattgaggggttgatggtttctctcggtccgaacgttatccttcaatac
acaatccagggtctctaccacccagcacgcaaagtgagagagatctattggaagatatac
aatatgctctatatgtttgctgccgattcaatggtgcttggatttccgatgattgaggac
gaggacgacaatacctatgcacgaacttcgttggaactgttcatttga

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