Thalassiosira pseudonana: THAPSDRAFT_27986
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Entry
THAPSDRAFT_27986 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14617
LMBR1 domain-containing protein 1
Organism
tps
Thalassiosira pseudonana
Pathway
tps04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
THAPSDRAFT_27986
04980 Cobalamin transport and metabolism
THAPSDRAFT_27986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_27986
Membrane trafficking [BR:
tps04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
THAPSDRAFT_27986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LMBR1
Motif
Other DBs
NCBI-GeneID:
7442337
NCBI-ProteinID:
XP_002289422
JGI:
27986
UniProt:
B8BZW6
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All DBs
Position
4:1568386..1570206
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AA seq
529 aa
AA seq
DB search
MADVFLILVIVIAFVILTIVGLYLVVKYQHPDDKNDAYVPKLVVLFGFVLSGATVLLLPL
DVANNEGYAGLNMALFWEIFYWLITAWIFFLIPFSMFYYEADDGMLMAGTSVGAKPNSRI
CEAVKYEMFVVVIFGLIFSMTYLFMNSTDIPVREVMGPSFSSGASYSITARDTEGFSSSQ
LAVMGSADSAVLGLNRVNPTLGSIELSVNASTFYAGLMAWLGWFLFALFGAIGLAALPLD
LILAFVHRPHHMDAVEFAEAQMSLRDRVNELVSVGELIKLEREERAQQNGGKGGGFFNKE
ARKQAAEEKKTLLQFKQAVYLLEEDAEDFANCSENYKNYNPLIPIGCLIGGILAFIISIF
WVLHIILYMLPAEPVTPFLNSFFQWFKWFPLFGVLCVAIFSFYLLMAALKGCFKFGLRFL
FFQVHPMKLNKTYMSSFLFNIGLCLLCALPVVQFCASAFQDYARYTTINQVFNVQLYYLK
FFGWWWRQKIFEYVLLAIVLLTCLYLGCRPRDSSASNSINLRDRLKQRM
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtcttcctcatattagtaatagtaatagccttcgtcatcctcacaatcgtt
ggcctctacctcgtcgtgaaatatcaacatccagacgataagaatgatgcatacgtgccg
aaattagtggtgttgtttggttttgtgttgagtggtgctacagtgctcttgttgccgttg
gatgtggcgaataatgagggttatgctggcctcaacatggcactcttctgggaaatcttc
tactggctcatcaccgcctggatcttcttcctaatccccttcagcatgttctactacgaa
gccgacgacggcatgctcatggccggtacctccgtgggcgccaagcccaattcgaggatt
tgtgaagcagtcaagtatgaaatgtttgtggtggtaatatttggattgatcttttccatg
acgtatctgtttatgaatagtacggatatccctgtgagggaggttatggggcctagtttt
tcgagtggtgcgagttattcgattactgcgagagatacagaggggtttagttctagtcag
ttggctgttatgggaagtgcagatagtgctgtgcttggattgaatagagtcaatcctacg
ctgggcagtatcgagttgagcgtcaatgcctctacgttttatgctggtcttatggcatgg
ttgggatggtttctgtttgctctctttggagctatcggattggctgcattgccgcttgac
ctcatcttggcatttgtgcacagacctcatcatatggatgcagtagagtttgcggaagca
caaatgtcactacgcgatcgtgtcaatgaactagtcagcgtgggagagttgataaagctg
gaacgcgaagaacgagcacaacaaaatggtggaaagggcgggggattctttaataaggaa
gcgaggaagcaagctgccgaagagaaaaagacgttgctgcaattcaaacaggcggtgtac
ttgttggaagaggatgcagaagattttgcaaactgctcggagaactacaagaactacaat
ccgttgattccgattgggtgcttgataggggggatcttggcttttatcatctccatattt
tgggtattgcacatcattctgtacatgcttccggcagaaccagtcacgccctttctcaat
tccttcttccaatggttcaagtggtttccattattcggtgtactgtgcgttgccattttc
tccttctacctcctaatggcagcactcaaaggttgcttcaaattcggactacgattcctc
ttcttccaagtgcatccaatgaagttgaacaagacgtacatgtcgtcctttctcttcaac
ataggactatgcttattatgtgctcttccagtggtacaattctgcgcgagtgcattccaa
gattatgcacgatacactaccatcaatcaagtgttcaatgtgcagttgtactatcttaaa
ttctttgggtggtggtggaggcaaaagatctttgagtatgtgctcttggccattgtgttg
ttgacgtgtctttatctgggatgtcgaccgagggactcgagtgcttcgaatagcattaat
ttgagggatcggctaaagcagagaatgtag
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