Thalassiosira pseudonana: THAPSDRAFT_28004
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Entry
THAPSDRAFT_28004 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_28004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_28004
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_28004
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
THAPSDRAFT_28004
Spliceosome [BR:
tps03041
]
Complex B
Other components
Prp19-related factors
THAPSDRAFT_28004
Complex C
THAPSDRAFT_28004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_15
TPR_2
TPR_16
Suf
ARM_TT21_C
TPR_12
TPR_MalT
ARM_TT21
Mad3_BUB1_I
RPN7
TPR_9
Motif
Other DBs
NCBI-GeneID:
7443740
NCBI-ProteinID:
XP_002289912
JGI:
28004
UniProt:
B8C032
LinkDB
All DBs
Position
4:complement(1723234..1726375)
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AA seq
832 aa
AA seq
DB search
MIGERSVSLLPGSYKLWMKHLSFCLSLLDHSLPVYLLSSSSSHNHYKLTQSAFERALVRL
HKMPKLWLMYAAFVSLYDPLRDPTTVRRVYDRALVALPASQHERVWEEIICWVTGILPST
ALRILRRHALCFDTTFREDLATLCITRYKRYGEGASLLLQLLNNENASGSSTTFLSPNGT
TRHELWLRFADVCTSHPNEAKQQKQQKNIQVISHRLGEMEGTLWTRLAEYHVRAGDFELA
RSVYEEALDAITRVRDFSLVFDAYVRFEEGDLDILLGDNSLQDENAESSADVELAISRAE
HLTSRRPLLLNRVLLRQNPNNVGEWIKRSQLYLDLGEVDMAASALEEALKSVNSGKAVNG
SPSTIVLTLIDVHENKQKDLEAARNVLERICYNNEYTFTDTDDLAQCHSAWVELELRQEN
WDMALNLARRAVSSNTGGQKRGFKAVRGLSRSLRLWNLLFDLEESLGTVQTTKDAYDRSL
ELKVATPSHVLNYANFLKDKKYFEESFAAYERGLGLFPFPHAGATLLWKNYLTNFLERYE
GSKTPRVRELFDRCLADCPPEESPEFYLQYGEYEETHGLTKRALGVYERMCNAVPAAENY
TAFRLYIAKAIKYLGVTSARPIYERAISALEDKPAASICLEYAKMETGLRETDRARTVLV
FGAQLADPRRDPDYWNAWHEFEVSHGNEETFREMLRVKRSVQAAFSTVNYNAAEMGSGAP
KVDTLTEESALEMIAEREGIETEKQPVVGGFVQAKRTADMADLGEVERRAARLRQATGAQ
NVSAGDDEIDIDDVDEEGEEPQQAPRTSNVGGVSTKAVPAAVFGGITTCGDN
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgattggtgaacgttccgtcagtttgttaccggggagttacaaattatggatgaagcat
ttatcattctgtttgagtttattggatcattcgttaccggtatacctcctctcttcttcc
tcctcacacaatcactacaagctgactcaatcggcattcgagagggcattggtccgtcta
cacaagatgccaaaactgtggctcatgtatgcggcgttcgtatcgttgtatgatccgctt
cgggatccaacgactgtgcgaagggtgtacgatcgagcgttggtggcacttccggcgagt
caacatgagagggtttgggaggagattatatgttgggttacggggatattgccttcgacg
gcacttcgtatcctccgccgtcatgcattgtgctttgataccacatttcgtgaagatttg
gcaactttgtgtattactcggtacaaacgatacggggagggggcatcgttgttgttgcaa
cttctcaacaatgagaatgcaagtgggtcatcgactaccttcctaagtccaaatggaacc
acaagacacgagttgtggttacgttttgcagatgtgtgtactagtcatcctaatgaggca
aagcagcagaagcaacagaaaaatattcaagtcattagtcatcgtttgggtgaaatggag
gggacgctgtggacacgacttgcggaatatcacgttcgtgcaggagactttgagctagca
cgttcagtgtacgaagaagcgttggatgcgatcactcgtgttcgtgatttcagtttagtg
tttgatgcctacgtgaggtttgaagagggggatttagatattcttcttggtgacaattct
ctccaagacgagaatgctgaatcatctgcggatgttgagcttgccatctcccgtgctgag
cacctgacttctcgtcggccactgcttctcaatcgtgtcctgttacgtcagaatccaaac
aacgtcggtgaatggatcaagcgatcgcaactttatcttgacttgggtgaagtggacatg
gctgcatcagcattggaagaggcactgaagtcggtgaattctggaaaggcagtaaacgga
tcaccatctacaatcgttctgacgttgattgatgttcacgagaacaagcaaaaggattta
gaggcagctcgcaatgttttggaaaggatatgttacaataatgagtacacgtttactgat
acggatgacttggcccagtgtcattctgcgtgggttgaattggagcttcgacaagagaac
tgggacatggcgttgaacttggcgagacgagctgtgtcgagcaacactggtgggcagaag
agaggattcaaggctgttcgcggtctttctcgcagccttcgcctttggaatttgctattt
gatttagaagagtctttgggaacagtgcagactaccaaggatgcatacgatcgttctttg
gagttgaaggtggcaactccttctcacgttctcaattatgccaacttcttgaaagacaaa
aagtatttcgaagagtcctttgcggcatacgaaagaggcctcgggttgtttccgtttccg
cacgctggagcaacgctactgtggaagaattacctcacaaactttctggagcgatatgaa
ggatccaaaacgcctcgtgtacgtgagctctttgaccgttgccttgccgactgtcctccg
gaagagtcgcctgagttctatcttcagtacggggagtacgaagaaacacatgggctgact
aaacgtgctctaggagtatacgaacggatgtgcaacgcggtgcctgctgccgaaaattac
actgccttccgtctgtacattgccaaggctattaagtaccttggcgttacctctgcgaga
ccaatttacgaacgtgccatctctgcattagaagataagccggctgcgagcatttgtttg
gaatacgccaaaatggagacgggattacgagagacggacagagctaggaccgtgttggtg
tttggtgcacaactagctgatcctcgtcgcgatccagactattggaatgcatggcacgag
tttgaagtatcacacggcaatgaggagacattccgtgagatgctgagagtcaaacgcagc
gtacaggcagcgttctctactgtcaattacaacgccgctgaaatgggatccggtgctcca
aaggtggatacactaacggaagagagtgctttggagatgattgctgaacgagagggtatt
gaaacggagaaacagccagtcgttggtggattcgttcaagcaaagagaactgcagatatg
gcagatttgggagaagttgagaggagagcagcaagattgcgtcaggcaactggagcccaa
aatgtgagcgcaggagatgacgagattgatattgacgacgttgacgaagaaggagaagaa
ccgcaacaggcaccaaggacgtcaaatgttggaggagtcagcacaaaagctgttccagct
gcggtcttcggcggaatcaccacctgcggagacaactga
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