Thalassiosira pseudonana: THAPSDRAFT_2897
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Entry
THAPSDRAFT_2897 CDS
T01078
Name
(RefSeq) predicted protein
KO
K15172
transcription elongation factor SPT5
Organism
tps
Thalassiosira pseudonana
Pathway
tps03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
THAPSDRAFT_2897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_2897
03019 Messenger RNA biogenesis [BR:
tps03019
]
THAPSDRAFT_2897
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
THAPSDRAFT_2897
RNA polymerase I system
THAPSDRAFT_2897
Messenger RNA biogenesis [BR:
tps03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
THAPSDRAFT_2897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW5_SPT5
KOW
Spt5-NGN
KOW2_Spt5
KOW7_SPT5
KOWx_SPT5
KOW1_SPT5
Ribosomal_uL24m-like
Myosin_N
Motif
Other DBs
NCBI-GeneID:
7450425
NCBI-ProteinID:
XP_002288047
JGI:
2897
UniProt:
B8BVN2
LinkDB
All DBs
Position
2:complement(2156680..2160380)
Genome browser
AA seq
1158 aa
AA seq
DB search
MMGGKMMRGKMFRPSGSDDDDEEGGDKHLFDSSDSDDSSDDDDSAAGKDETDKPAAAANK
EEDGAKKSANLSSDDDSDDDGNNEDKKPSASGGDNKRTREDSSDDDSSDDDDDEPSPEKA
KSKKSQKKRPKINFFDEEAEASDDDSDDEDGSDKDPDDVVRKHYTEEEIRKEYRDEEAEA
IIAQQDRRRQRAGGWLGGSWKRGIGWIGGLWIGGGWIPWGGGMRGGVLVRVVARKGAGDR
DDEDMIGRREDDDEEMGVGQSYTAVSQQSLMPSVSDPNLWMFSCPTGKEQELVYQIMNKA
VAFAKRGRPLGITSVVAAQTKGKVYVESYSEPAVMEALQGVRGLMIYSAVKVPISDMTTV
MTVVPKKVPVKKNDWVRMTRGHFKGDLALVKHVRDSGLKCVIQCVPRLDHTLSDLPPEEA
KIRRRTVRPPQKFYNSQEVASMGKHGLRQRFPGMNDVMCDFYDGNYYHDGYLLKEVTIGT
VVKPCTADDPPTLDELQRFRHKSRAGDGDGYDDGDEEDENEGSKMAGSLLSELSELQGKT
GLASGGSNDRGLMIGDTIEVIEGDLVGMQGKILSLEGTTVKVRPNNDAALADLGGMDEVE
FLISQIRKFIAVGAHVKVMDGRYANETGVVVAVENMDGEEGSDFDCTAVVLTDMTHKEIS
VRTSQLQESAEIASGQDKLAGYELHDLVVLSGGGSANEVGVIVRVGREEFTVINNHGIAR
EARPEELRGKRNSASQRAVALDVQANQIRCGDSVTIVEGPHKGKVATIKRMSRAQLFLYS
QFRSENSGIFVVRSRSCVLTGGAKASRSGGAGGAAGESPFSTPMSQSNGRGAAAAMRAER
DESLLGKTVRIQAGQWKGYLGTVSHTTATHVQVELHSRLKKVMVVKERVHVVGDKFGATD
AGVGSNDMGITTVPFMGGITPMHGGETPMHGGATPMHGGATPMHDGYGATPSHSSGMSDD
IWRPGGSIDREAEGVDESMNDGWGSGNGNVIKKQENQFGDSSGDAVSGWGDSSDHGGSTW
TPNTGEAESMVKHDPDGYGNDAGGMDTAMEGSGEEAAVWFMERVCVQLKKNTAQAVIKEI
NGSMAVVEMEDKSTLTVRNGEVSMVPPQEHDMVLVTGGADVGVEGELVCIDGTDAILKES
NENFKIVDFIHLAKISAT
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgatggggggcaaaatgatgcgtggcaaaatgtttcgtcccagcggttccgacgacgat
gacgaagaagggggagacaaacacttgtttgattcctccgactctgacgactcgtccgat
gatgacgatagcgcagcaggcaaggacgagacggacaagccggctgctgccgccaacaag
gaggaggatggtgccaaaaagagtgccaatctatcctcagatgatgattcagacgatgat
ggtaacaatgaagataagaaaccatccgccagtggcggagacaacaaacgcacacgtgag
gattcatccgacgacgactcctctgacgatgacgacgatgaaccctcccccgaaaaagcc
aagagcaaaaagtcccaaaagaaacgacccaaaatcaacttctttgacgaggaagcagaa
gccagcgacgacgactcggacgacgaagatggttctgacaaggaccccgacgatgtcgtt
cgcaaacattacaccgaagaagagattcgtaaagaataccgcgatgaagaagccgaagca
atcattgcacaacaagatcgtcgtaggcagcgtgcggggggatggcttggtgggagttgg
aagagaggcataggatggataggaggattgtggataggaggaggttggattccatgggga
gggggaatgagaggaggggtgttggtgcgggtggtggctaggaagggggctggggataga
gacgatgaggatatgattgggaggagggaagatgatgatgaagagatgggtgttggtcaa
tcgtacactgcagtttctcagcagtcgttgatgccctccgtttcggatcccaacttgtgg
atgttcagttgtcccactggaaaggaacaagagttggtgtatcaaatcatgaacaaggcc
gtggcgtttgctaagaggggaaggcctctgggaatcactagtgttgtggcagcacagacc
aagggaaaggtgtacgtagagagctacagtgaacctgcggttatggaggcattgcaggga
gttcgcggtttgatgatttattcggctgtcaaggttcctatttcggatatgacgactgtc
atgactgttgttcccaaaaaggttcctgtcaagaagaatgattgggtccgcatgacacga
ggccacttcaagggagatctcgctcttgttaagcacgtgcgagattctggtctaaagtgt
gtcattcaatgcgttccccgccttgaccataccctatctgacctccccccggaggaagca
aagatacgccgacgcaccgtcaggcctccccagaagttctataactctcaagaagttgct
tccatgggaaagcacggactcaggcaacgctttcctgggatgaacgatgtcatgtgtgat
ttttacgacggcaactattaccacgatggttatttgctcaaggaggtgactatcgggacg
gttgtaaaaccctgtacagcagatgatcctcccaccttggatgagttgcagagattccgt
cacaagtccagggcaggagacggtgatggctacgatgatggtgacgaggaagacgaaaac
gaagggtcgaagatggcaggatctctcttgagcgaattgagtgaacttcaggggaagaca
ggccttgcatctgggggatccaacgatcgtggattgatgattggtgacactattgaagtc
attgagggagatctcgtgggaatgcagggaaagatattgagtttggaaggaaccactgtc
aaagttcgtcccaataacgatgcggcattggctgacttgggaggaatggacgaggttgag
ttcttgatctcccagattcgcaagttcattgctgtaggagcccatgtcaaggttatggat
ggccgttatgccaacgaaactggcgtggttgttgctgtggagaacatggacggggaagag
ggatcagactttgattgcactgctgttgtgctgacagacatgacacacaaggagatctca
gtgagaacttctcagctacaagagtctgcagagatagcctctggtcaagacaaactggct
ggatatgagctccatgatttggttgttcttagtggtggaggatctgcaaacgaagttggt
gttattgtccgtgtcggacgagaagaattcaccgtcatcaacaatcacggcattgcccgt
gaagcacgtcccgaagaattgcgtggaaagcgtaactctgcctctcaacgtgctgttgcg
cttgatgtgcaagcaaaccaaatcagatgtggggactctgtgacaatcgtcgaaggccct
cataagggaaaggttgcaactatcaaacgaatgagtcgggctcagttgtttttgtactct
caattccgttcagagaattcaggtatcttcgtcgttcgtagtaggagctgtgtgctaacg
gggggagcaaaggccagtcgatccgggggtgcaggaggtgctgctggagaaagtcctttc
agtaccccaatgtctcaaagcaatggccgtggggctgcagctgctatgcgtgcggagagg
gacgagagtcttctggggaagactgtcagaatccaagccggacagtggaagggttatctt
ggtactgtatcacacaccactgccacacacgtgcaggtagaattgcactcgagattgaag
aaggtcatggtagtgaaggaacgtgttcatgtcgttggagacaaattcggtgccaccgac
gctggggttggatcaaacgatatgggcattaccacagttccttttatggggggaatcact
cccatgcacggcggggagactcccatgcacggaggtgcaactccaatgcacgggggagct
acaccaatgcacgatgggtatggtgcaactccatctcattcaagcggtatgtcggatgat
atttggagacctggtggctctattgatcgcgaggctgaaggtgtagacgagtctatgaat
gatggttggggctcgggaaatggtaacgtaattaagaagcaagagaaccagttcggagac
tcttctggggacgctgtatctggctggggcgactctagcgaccatggtggctctacttgg
actccaaacacaggcgaggcagaatctatggtcaagcacgaccctgacggatacggcaat
gatgctggtggtatggacactgcaatggaaggaagtggcgaagaagctgctgtctggttc
atggagcgcgtttgtgttcagttgaagaagaacactgcccaggcagtgatcaaagagatc
aacggtagcatggctgtcgtggagatggaagacaaatcaacattgactgtgcgaaacgga
gaagtgtcgatggttcccccacaagaacatgacatggtgctcgttacaggaggagccgat
gtcggtgtggaaggagagctcgtttgtattgatggaacggacgctattctgaaggagtca
aacgagaacttcaagattgtcgattttattcacttggcaaagatttctgcaacttag
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