Thalassiosira pseudonana: THAPSDRAFT_3021
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Entry
THAPSDRAFT_3021 CDS
T01078
Name
(RefSeq) predicted protein
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
tps
Thalassiosira pseudonana
Pathway
tps03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
THAPSDRAFT_3021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_3021
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_3021
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
THAPSDRAFT_3021
Coactivators
SAGA/TFTC/STAGA complex
THAPSDRAFT_3021
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
THAPSDRAFT_3021
STAGA complex
THAPSDRAFT_3021
TFTC complex
THAPSDRAFT_3021
SAGA complex
THAPSDRAFT_3021
SLIK complex
THAPSDRAFT_3021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
Motif
Other DBs
NCBI-GeneID:
7452947
NCBI-ProteinID:
XP_002288108
JGI:
3021
UniProt:
B8BW09
LinkDB
All DBs
Position
2:complement(2545151..2546782)
Genome browser
AA seq
505 aa
AA seq
DB search
MQSATQTTLTNLVEQHVISLIRESAVVNRHSKRGGTLSAADSLEEDHGASASSSDATGGR
APKRRRLIHHDDVNMALLWRGSEKLYVSGLSPLGTDGDGSGVGQLLKSSASRTPITPAAL
LKSNAVPRIDLNAYLNSDNLPPPPTELGMTLHWLAVDGVMPLLRMNDVWNGFGVEGGRKE
LYSRDVAPLVQLDENDNNNNNPDSSIRIRELQHRLLSEELQLYFSKITTVLSNPNSPPME
VSSILNGIRTDGGIQELVPFLSRFVASGLMEKKKGGGGGIGMARRLVGLFDAMLDNASLH
LDLHLHQLFTPIGTCIVAKKLSSTSTIQYYDPTHYSLRYEAAASLVKACTIYSSQYTTMK
PRIIKLLTQQALRIDRPLVTQYGGIVGLSLFGARAVDAFVLPVARGYWEWWEAELERCVN
ENSGGDEVEEGGRGKKNKLRKRDVVKEYELSMCQQALLNAIGIFMQNVTPQEQAKRVDFV
SFADVFGERLIPMQPELTEYMMAVV
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccgccacccaaacaaccctaaccaacctagtagaacaacacgtaatctccctc
attcgtgaatctgccgtggtcaatcgccattccaaacggggagggacattgagcgcggcc
gattcgttggaggaggatcacggcgcatcggcctcctcttccgatgcgacgggaggacgt
gcgccaaagagacgaaggctgatccatcacgacgatgttaatatggcgctgttatggaga
gggtccgagaagttatatgtcagcgggctgtctcccctcggcactgacggagatggcagt
ggagtagggcagcttctcaaatcctccgccagtaggacaccaatcactccggccgcactg
ctcaaatccaacgcagtgccgcgcatcgacctgaatgcctacctcaacagtgacaacctc
cccccaccgccgacagaactgggcatgactctccattggctggctgtcgatggagttatg
ccactgttgagaatgaacgatgtttggaatggatttggcgtggagggaggaagaaaggag
ctgtattcgagggatgttgctccgcttgttcaacttgacgagaatgataacaacaacaac
aatccagactcctccatacgcatccgtgaactccaacaccgtctcctttcggaagagctt
caactctacttctccaaaatcaccaccgtattatccaatccaaactccccacccatggaa
gtatcctcgattctcaatggtattcgaaccgatggggggattcaagaattggtaccgttt
ctaagtcgatttgttgccagtggtttgatggagaagaagaagggtggtggtggtggtatt
ggtatggcacgacgattggtgggactctttgatgccatgttggataatgcatcgttgcat
ttggatttgcatttgcatcagttgtttacacccattgggacatgtattgttgccaagaag
ttatcatccacttccaccattcaatactatgatcccacccactactcactacgatacgaa
gcggcagcatccctagtcaaagcatgcaccatctactcatctcaatacacaacgatgaaa
ccgcgcatcatcaaactcctcacgcaacaagcgctacgtatagatcgaccattggtgacg
caatacggagggatagtggggttgagtctctttggtgcaagggcggtagatgcgtttgtg
ttgccggtggcgagggggtattgggaatggtgggaggcggagttggagagatgtgtgaat
gaaaacagtgggggagatgaggtggaagaagggggacgagggaagaagaacaagttgagg
aagagggatgtggtgaaggagtatgagttgagcatgtgtcaacaggctcttttgaatgcc
attggtatctttatgcaaaacgtaacaccccaagagcaagcaaaacgagtggactttgtg
tccttcgccgatgtgtttggagaacgattgattccgatgcaacctgagcttactgagtac
atgatggcggttgtgtag
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