KEGG   Thalassiosira pseudonana: THAPSDRAFT_3021
Entry
THAPSDRAFT_3021   CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
tps  Thalassiosira pseudonana
Pathway
tps03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    THAPSDRAFT_3021
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_3021
   03036 Chromosome and associated proteins [BR:tps03036]
    THAPSDRAFT_3021
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     THAPSDRAFT_3021
   Coactivators
    SAGA/TFTC/STAGA complex
     THAPSDRAFT_3021
Chromosome and associated proteins [BR:tps03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     THAPSDRAFT_3021
    STAGA complex
     THAPSDRAFT_3021
    TFTC complex
     THAPSDRAFT_3021
    SAGA complex
     THAPSDRAFT_3021
    SLIK complex
     THAPSDRAFT_3021
SSDB
Motif
Pfam: TAF6_C
Other DBs
NCBI-GeneID: 7452947
NCBI-ProteinID: XP_002288108
JGI: 3021
UniProt: B8BW09
LinkDB
Position
2:complement(2545151..2546782)
AA seq 505 aa
MQSATQTTLTNLVEQHVISLIRESAVVNRHSKRGGTLSAADSLEEDHGASASSSDATGGR
APKRRRLIHHDDVNMALLWRGSEKLYVSGLSPLGTDGDGSGVGQLLKSSASRTPITPAAL
LKSNAVPRIDLNAYLNSDNLPPPPTELGMTLHWLAVDGVMPLLRMNDVWNGFGVEGGRKE
LYSRDVAPLVQLDENDNNNNNPDSSIRIRELQHRLLSEELQLYFSKITTVLSNPNSPPME
VSSILNGIRTDGGIQELVPFLSRFVASGLMEKKKGGGGGIGMARRLVGLFDAMLDNASLH
LDLHLHQLFTPIGTCIVAKKLSSTSTIQYYDPTHYSLRYEAAASLVKACTIYSSQYTTMK
PRIIKLLTQQALRIDRPLVTQYGGIVGLSLFGARAVDAFVLPVARGYWEWWEAELERCVN
ENSGGDEVEEGGRGKKNKLRKRDVVKEYELSMCQQALLNAIGIFMQNVTPQEQAKRVDFV
SFADVFGERLIPMQPELTEYMMAVV
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgcaatccgccacccaaacaaccctaaccaacctagtagaacaacacgtaatctccctc
attcgtgaatctgccgtggtcaatcgccattccaaacggggagggacattgagcgcggcc
gattcgttggaggaggatcacggcgcatcggcctcctcttccgatgcgacgggaggacgt
gcgccaaagagacgaaggctgatccatcacgacgatgttaatatggcgctgttatggaga
gggtccgagaagttatatgtcagcgggctgtctcccctcggcactgacggagatggcagt
ggagtagggcagcttctcaaatcctccgccagtaggacaccaatcactccggccgcactg
ctcaaatccaacgcagtgccgcgcatcgacctgaatgcctacctcaacagtgacaacctc
cccccaccgccgacagaactgggcatgactctccattggctggctgtcgatggagttatg
ccactgttgagaatgaacgatgtttggaatggatttggcgtggagggaggaagaaaggag
ctgtattcgagggatgttgctccgcttgttcaacttgacgagaatgataacaacaacaac
aatccagactcctccatacgcatccgtgaactccaacaccgtctcctttcggaagagctt
caactctacttctccaaaatcaccaccgtattatccaatccaaactccccacccatggaa
gtatcctcgattctcaatggtattcgaaccgatggggggattcaagaattggtaccgttt
ctaagtcgatttgttgccagtggtttgatggagaagaagaagggtggtggtggtggtatt
ggtatggcacgacgattggtgggactctttgatgccatgttggataatgcatcgttgcat
ttggatttgcatttgcatcagttgtttacacccattgggacatgtattgttgccaagaag
ttatcatccacttccaccattcaatactatgatcccacccactactcactacgatacgaa
gcggcagcatccctagtcaaagcatgcaccatctactcatctcaatacacaacgatgaaa
ccgcgcatcatcaaactcctcacgcaacaagcgctacgtatagatcgaccattggtgacg
caatacggagggatagtggggttgagtctctttggtgcaagggcggtagatgcgtttgtg
ttgccggtggcgagggggtattgggaatggtgggaggcggagttggagagatgtgtgaat
gaaaacagtgggggagatgaggtggaagaagggggacgagggaagaagaacaagttgagg
aagagggatgtggtgaaggagtatgagttgagcatgtgtcaacaggctcttttgaatgcc
attggtatctttatgcaaaacgtaacaccccaagagcaagcaaaacgagtggactttgtg
tccttcgccgatgtgtttggagaacgattgattccgatgcaacctgagcttactgagtac
atgatggcggttgtgtag

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