Thalassiosira pseudonana: THAPSDRAFT_31062
Help
Entry
THAPSDRAFT_31062 CDS
T01078
Name
(RefSeq) predicted protein
KO
K03363
cell division cycle 20, cofactor of APC complex
Organism
tps
Thalassiosira pseudonana
Pathway
tps04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
THAPSDRAFT_31062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tps04121
]
THAPSDRAFT_31062
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_31062
Ubiquitin system [BR:
tps04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
THAPSDRAFT_31062
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Sister chromatid separation proteins
APC/C complex
THAPSDRAFT_31062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_RIG_1st
Beta-prop_HPS5
Ge1_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
WD40_RFWD3
DUF1513
Motif
Other DBs
NCBI-GeneID:
7445493
NCBI-ProteinID:
XP_002287004
JGI:
31062
UniProt:
B8BS23
LinkDB
All DBs
Position
1:complement(2527496..2528695)
Genome browser
AA seq
399 aa
AA seq
DB search
MLEYKSSLLGIDDSKSRILSFADKAPAPKGDTVNNLQVLYSGSTTARKNKSSTKLVSRHI
PSAPTRILDAPDLLDDYYLNLLSWSDTNVLAVALSQTVYLWNAETGAIDELCNVESEGPD
AHISSVSWIQEGGGHLAVGTSWGKTLLWDVTAGKQLRKMDGHTDRIGALSWNRHILSSGG
RDNLIVNHDVRIAEHKTATLSGHSQEVCGLAWSPDGMTLASGANDNKLCLWDATASSSSR
ARYELTEHQAAVKALAWSPHERNLLATGGGTADRCIKFWNTQTGSMLNSIDTGSQVCALQ
WNPFEKEILSSHGFARNQLCLWKYPTMAKVKELDGHTARVLHMATSPDGASVVSAAADET
LRFWDVFAPPSKTHTGKRGASDVPGGAKSKKLSRTMHIR
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaatacaagtcgtctcttcttggtattgatgattcaaagagtcgtatcttgagt
tttgcagacaaggcacccgcacccaagggcgatactgtcaacaaccttcaagtattgtat
tctggctccaccaccgcccgtaagaacaagagctccaccaagctcgttagcagacacatc
ccatctgcacccactcgtatcttggatgctcctgatttgctcgatgattactacctcaat
cttttgtcgtggtctgatacgaatgtgttggcagtggctctttctcagactgtgtacctt
tggaatgcggagactggagctattgatgaactttgcaacgtggagagcgagggacctgat
gctcacatctccagtgtctcttggatccaagaaggtggtggacatttagctgttggtaca
tcatggggaaagactttgctttgggacgtcactgcaggaaagcaacttcgtaagatggac
gggcacactgatcgtatcggtgctttgtcttggaaccgtcacatcctctccagtggtggg
cgtgacaacctcatcgtgaaccatgatgtcagaatcgcagagcacaagactgctactctt
tcgggtcattcgcaggaagtttgtggactcgcttggtcccccgatggtatgactcttgcc
agtggtgccaatgacaacaaactgtgcttgtgggatgctactgcgtcgtcgtcatcgcgt
gctcgttacgagttgacggagcatcaggctgcagtgaaagctttggcttggtctcctcat
gaacgcaacctccttgccactggtggaggaactgccgacaggtgcatcaagttctggaac
acacaaactggctctatgctcaactccatcgatactggctcccaagtctgcgcattgcag
tggaacccttttgagaaggaaatcctttcttctcatggatttgctcgcaaccaactttgc
ctttggaagtaccctaccatggccaaggttaaggagcttgatggacacaccgcacgagtc
cttcacatggctacatcacccgacggtgcctcggttgtttcggcagctgctgatgagact
ttgcgtttctgggacgtcttcgctccaccttccaagacccacacagggaagcgtggtgca
tccgatgttcctggaggagccaaaagcaagaagcttagcaggaccatgcacattcgttga
DBGET
integrated database retrieval system