Thalassiosira pseudonana: THAPSDRAFT_31358
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Entry
THAPSDRAFT_31358 CDS
T01078
Name
(RefSeq) intraflagellar transport protein
KO
K16474
intraflagellar transport protein 88
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tps03037
]
THAPSDRAFT_31358
Cilium and associated proteins [BR:
tps03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
THAPSDRAFT_31358
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_16
CFAP70_TPR_C
TPR_19
TPR_14
TPR_8
TPR_6
TPR_7
ANAPC3
TPR_17
TPR_11
DUF6340
TPR_10
TPR_21
TPR_CcmH_CycH
TPR_Psidin_N
ARM_TT21_N
CFAP70_mid_TPR
TPR_INTS8
IFT56
ARM_TT21
HrpB1_HrpK
ARM_TT21_C
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
7445536
NCBI-ProteinID:
XP_002286354
JGI:
31358
UniProt:
B8BRP4
LinkDB
All DBs
Position
1:<2204514..>2206240
Genome browser
AA seq
549 aa
AA seq
DB search
MENQINKLIEETAQLKRGGQIEKALDKAKEGSKKDQLLRLHRKTHSLSGDFEMETTYATW
FNLASAYEANGMLDEALTAYTYLTKQRGQHLLTSRVRINMGNVYYAQSDFPSAIKMFKMA
LDQIRKDESSLTHKIFRNIGNSFFRLGSIRDAVKNYESVMDGAPDFQTGFNLLICHLVLG
DVESIKSDFIRLVEIPQNSDGPLSDDYEFIAPNGLSMTNDSLQQELATRSKESSRYFLTS
ARMIAPSLDSNNWSAGYDWVCNALKERHHEVLAAQLELEQAVQRLKHKEFMGAVKTLKNL
EKKGTAVKAKAATNLSFVKFLQGDIDRASKYADAALEADRYNADALVNKGNCFYVTEEYA
LAKELYLEAIGVQTDCAQAIFNLGLCNVQLELYEESIEAFENLHKITPNNPAVIYQVADI
YDLRGQTDDSTKWFNVLSARLSSDSTILSRLGYLNSQKKQEEGLHYQLESYRHNPVDLDV
ISNIGAWFVQQEMYEKSIYFFQQAALVQPKEIKWGLMAASAFRRTGDHQSALTLYEKLHD
QFPASIECE
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccaaatcaataaactgatcgaagagacggctcaactcaaacgtggcggccag
atcgagaaagctctcgataaggcaaaggaaggtagcaagaaggatcagttgctcagactg
cacagaaagacgcattctctttccggtgactttgaaatggaaaccacctatgccacttgg
tttaacctagcttccgcctacgaggccaacggcatgctagatgaagccctcacagcgtac
acctacttgacgaagcagcgaggacagcatctcttgacaagccgtgtgcgtataaacatg
gggaatgtctactatgcccaaagcgactttccatctgcaatcaaaatgttcaagatggcg
ttggatcagatacgaaaagacgagagctctctgacgcacaagatctttcgaaatattggc
aactccttcttccgtctcggcagcatccgcgatgcagtcaagaactatgaatcggtgatg
gatggagctcctgactttcaaaccggattcaaccttctcatttgccacctagtattgggt
gatgtggaaagcatcaaaagcgatttcattaggcttgtcgagattccacaaaatagcgac
ggtcctctttccgacgactacgaattcattgctccaaacggtctatcaatgacaaacgat
agtcttcaacaggagctagcgactcgctcaaaggaatcaagccgctattttttgacttca
gcacgaatgattgctccgtcgttggacagcaataactggtctgctggatatgattgggta
tgcaacgctctcaaagagcgacatcatgaagttctcgctgcccaacttgaactagaacaa
gctgttcagcgactgaagcacaaagagttcatgggagctgttaaaacgctaaagaatctg
gaaaagaagggtactgcagtaaaagcaaaggcagccactaacctttcatttgtcaagttt
ctacagggagatatcgaccgtgcttcaaagtacgcagacgctgctctggaagcagatcga
tacaatgcagatgcattagtgaacaaaggaaactgcttctacgtcactgaagagtatgca
cttgcaaaggaattgtatcttgaagcgattggtgtccaaactgattgtgcacaggccatc
ttcaatctgggtttgtgcaatgttcaactagaattgtacgaagaatcgatcgaggcgttt
gagaaccttcacaagataacacccaacaacccagctgtcatttaccaagtagccgacata
tacgatcttcgaggacaaaccgatgattcaaccaagtggttcaatgttctatcagctcgt
ctctcaagcgattctaccattctctctagactcggctacctcaactcacagaagaaacaa
gaagaaggattacattatcagctggagagttacagacacaatccagtagatttggatgtg
atttcgaacattggtgcttggtttgttcagcaggaaatgtacgagaagagcatttacttc
tttcagcaagccgctctcgttcagccaaaagaaatcaagtggggtctcatggctgcgagt
gctttcagaaggactggggatcatcaaagtgctctgactctgtatgaaaagctgcacgat
caatttcctgcgagtattgaatgtgagtga
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