Thalassiosira pseudonana: THAPSDRAFT_32661
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Entry
THAPSDRAFT_32661 CDS
T01078
Name
(RefSeq) predicted protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
tps
Thalassiosira pseudonana
Pathway
tps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
THAPSDRAFT_32661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_32661
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
THAPSDRAFT_32661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
AAA_22
MutS_III
AAA_27
SAC9_GBDL_1st
Rad17
Motif
Other DBs
NCBI-GeneID:
7451281
NCBI-ProteinID:
XP_002288912
JGI:
32661
UniProt:
B8BYC0
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Position
3:complement(1414608..1415621)
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AA seq
338 aa
AA seq
DB search
VYFSTKELEQLGTKKKDLMMEYEEKQRDIVCKAMVVAASYVPVLERASMTLSELDVLASF
AYVAAYSSNGYCRPEMTDGEEDGLGIEVSYSSTERCDSSLWFSKHNISFLVNTFQLTGAR
HPCVELQDDMNFIANDFNLVFGASSFLLVTGPNMGGKSTYIRSLGAIITLAQIGSFVPCT
SAKINIVDHILARVGAGDAQDRGISTFMAEMLEASSILRTSTKRSLIIIDELGRGTSTFD
GFGLAKAISEHVVQKIGCMTVFATHFHELTALEEQEASVTNCHVSAHSDKQNGLTFLYEV
RPGPCLESFGIQVAEMANMPSNIITDAKRKAKQLENFD
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
gtgtatttctccacgaaggagttggaacagctcggcacaaagaagaaggatttgatgatg
gagtacgaggagaagcaacgtgatattgtatgcaaggccatggttgtggctgcaagttac
gtgccagtgttggaacgagcatcgatgactttatctgagttggatgtattggcgagcttt
gcttatgtggctgcatacagtagcaacggatactgtcgtcctgagatgacggacggagaa
gaggacggattgggaattgaggttagttattcgagcaccgaacgttgcgattcttcgctt
tggttctctaaacacaacatatcttttctcgtcaatacatttcagctcacgggggctcgt
catccttgtgtggagcttcaagatgatatgaacttcattgccaatgactttaacctcgta
ttcggtgcatcctcattccttcttgtcactggacctaacatgggaggaaagtcaacgtac
attcgctcgcttggagctatcattaccttggcgcagattggaagttttgtaccctgtacc
tcggccaaaatcaacattgttgatcatatcttggccagagttggagctggtgacgcacag
gatcgtggtatatctaccttcatggctgaaatgctggaggcttcttccattcttcgcacc
tcgaccaaacgcagtctcatcatcattgacgagctcggaagaggaacgagcacatttgat
ggatttggtttggcaaaagcgatatcagaacatgtcgttcagaaaattggttgcatgact
gtgtttgcaactcacttccatgaactgacggcgttggaagagcaagaggcctcggtaacc
aattgccacgtgtctgcccacagcgacaaacagaacggacttacgtttctctacgaagta
cgaccagggccttgcttggaaagttttggtattcaagtggccgaaatggcaaacatgccg
tcaaatatcatcaccgatgccaaacgcaaagcaaaacagttggagaactttgac
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